Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 271 7e-68 >seq2 Length=2234776 Score = 271 bits (300), Expect = 7e-68 Identities = 598/889 (67%), Gaps = 17/889 (2%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 |||||||| ||| |||||| ||||| || || ||||||||||| ||| || |||||| Sbjct 2161570 TTTTGATAATCAGAAACTCTCTTTTCGAAGAAATTAGTTTTACCAGCCAAAGAGATATTT 2161511 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAAT 13488 ||||| || || |||||||| | || | | || || | || | | | | | Sbjct 2161510 TCCATGAAGTCAAATGGATTGGAAGAGTTGTAAACCTTCTTGTTGCCCAAAGCAAGAAGT 2161451 Query 13489 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13548 |||||||| |||| ||| |||| ||| ||| |||| | | || |||||||||| || Sbjct 2161450 AATCTATCTGCAACAAATTCAACATACTGACACATGAGCTTGCAGTTCATACCTAATAAA 2161391 Query 13549 TTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 13608 ||||| | || || || | | ||||| || ||||| || | || || Sbjct 2161390 GAGACAGGCAAAGCATCGGTGAAGTAGCCCTTTTCGATTTCGACAGCTTCAGTAATGATC 2161331 Query 13609 ATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAA 13668 | | || ||| || ||| | || | ||| || | || || ||||| Sbjct 2161330 TTTTCAACAATAACAGCGTCAGGTCTGTTGTTCAAATGAGAGAATAACAAGCAAGCAAAG 2161271 Query 13669 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13728 ||| ||| | || |||||||| | || | |||||| || ||||| | || ||||| Sbjct 2161270 TCAGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAGAATGTGAGACCAGGCATT 2161211 Query 13729 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 13788 || |||| || || | ||| || || | ||| || || || || ||||| || || ||| Sbjct 2161210 AAACCTCTCTTCTTGAGCCAGAAGATAGAAGCAAACGAGCCCGAGAAGAAAATACCTTCA 2161151 Query 13789 ACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT--TTGATATCCATT 13846 || |||||||| || | || || ||| |||||| |||||| | || ||||| |||| Sbjct 2161150 ACAGCAGCAAAGGCAACTAATCTTTCACCAAACAATGCTTCATCGTCATTGAT--CCATC 2161093 Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT 13906 | ||||||||||| |||| ||| || | || |||| || ||||||||||||| Sbjct 2161092 GTAAAGCCCATTCAGCCTTTTGTTTGATGCATGGAATGTTTTCAATAGCATTGAATAAAT 2161033 Query 13907 GTTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 13964 || |||| || || |||| || || |||||||| |||||| || ||||||| Sbjct 2161032 AATCTGCTTCCTTTGTGTCCTTG--ATATAAGTATCAATCAGTAAGGAGTAAGTTTCAGA 2160975 Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14024 ||| |||||||| || || || |||||||| || || | ||||| | ||| || Sbjct 2160974 GTGGATGTTTTCCATCATGATTTGGAAACCATAGAAGCACTTGGCTTCAGGAAGTTGAAC 2160915 Query 14025 CTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 || | | || ||||| | || ||||||||||||||||||||| || ||||| || Sbjct 2160914 TTCAGCTGAGAAGTTTTCTACTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAA 2160855 Query 14085 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TTGA---GTTTTTTCCAATC 14138 || || | || |||||| || || ||||||| || | | |||| |||||| Sbjct 2160854 AGCTAAGACTCTTGAAATAAAAAAT--CT-TTCATTGTCATTCAAACGGTTTTCCCAATC 2160798 Query 14139 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14198 | |||||| | || | || || | ||||| || ||| ||||||| || Sbjct 2160797 ATGAACATCCTTTCCTAAGTCAATCTCTTCTGCAGTCCAGAAGGAAGCTTCAGCTTTCTT 2160738 Query 14199 ATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTT 14247 ||||||| ||| ||||| | |||| || || |||| ||||||||| Sbjct 2160737 ATACATTTGCCAGATTTCATGATATTTAATTGGGAAAAGAACAAATCTT 2160689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588710264600