Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq1 102 6e-17
seq4 89.7 4e-13
>seq1
Length=2480924
Score = 102 bits (112), Expect = 6e-17
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | || |||||||||| ||| ||||||||| | ||||| || |||
Sbjct 1632693 CCACCACGGAGACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 1632752
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
|| || | | |||| || ||||| || || ||||| ||||| ||||||||||| | ||
Sbjct 1632753 AAAGTTCTTCCGTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGA 1632812
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||||| || || ||| |||||| || ||| |||||| || || ||
Sbjct 1632813 ATTCCTTCCTTGTCTTGAATCTTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCAACT 1632872
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAA 43101
|| | || ||||| || || |||| || || ||||||
Sbjct 1632873 TCCAAGGTAATAGTCTTACCAGTTAAGGTCTTAACAAAA 1632911
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956
|||||||||||| | || |||||||| | |||||| || || | || ||| ||||
Sbjct 1873705 TAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTC 1873646
Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016
|| ||||| || || ||||| || | || || ||||| | || | |||||| || ||
Sbjct 1873645 TTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTC 1873586
Query 43017 GCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAG 43075
||| |||| ||||| || ||| ||||| | || || |||| || || |
Sbjct 1873585 TTGAATCTTACTC-TTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGG 1873527
Query 43076 TTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||| || || | || ||||| |||||||||||
Sbjct 1873526 TTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956
|||||||||||| | || |||||||| | |||||| || || | || ||| ||||
Sbjct 1873933 TAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTC 1873874
Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016
|| ||||| || || ||||| || | || || ||||| | || | |||||| || ||
Sbjct 1873873 TTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTC 1873814
Query 43017 GCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAG 43075
||| |||| ||||| || ||| ||||| | || || |||| || || |
Sbjct 1873813 TTGAATCTTACTC-TTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGG 1873755
Query 43076 TTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||| || || | || ||||| |||||||||||
Sbjct 1873754 TTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956
|||||||||||| | || |||||||| | |||||| || || | || ||| ||||
Sbjct 1874161 TAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTC 1874102
Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016
|| ||||| || || ||||| || | || || ||||| | || | |||||| || ||
Sbjct 1874101 TTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTC 1874042
Query 43017 GCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAG 43075
||| |||| ||||| || ||| ||||| | || || |||| || || |
Sbjct 1874041 TTGAATCTTACTC-TTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGG 1873983
Query 43076 TTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||| || || | || ||||| |||||||||||
Sbjct 1873982 TTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949
>seq4
Length=1903616
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | ||| |||||||||| || |||||||| | ||||| || ||
Sbjct 1735258 CCACCACGGAGACGTAAGACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAA 1735317
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || | | | || ||||| || || || ||||| ||||| || |||||||| | ||
Sbjct 1735318 AGGGTTCTTCCATCTTCCAACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 1735377
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| |||||||| || ||| ||||| || ||| ||||| || ||| ||
Sbjct 1735378 ATTCCTTCTTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCAACC 1735437
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || ||||| || || || || || || || |||||||||||
Sbjct 1735438 TCGAGAGTAATAGTCTTACCCGTAAGGGTCTTAACGAAAATTTGCAT 1735484
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381369530280870
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |