Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1 102 6e-17 seq4 89.7 4e-13 >seq1 Length=2480924 Score = 102 bits (112), Expect = 6e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||||| ||| ||||||||| | ||||| || ||| Sbjct 1632693 CCACCACGGAGACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 1632752 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | |||| || ||||| || || ||||| ||||| ||||||||||| | || Sbjct 1632753 AAAGTTCTTCCGTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGA 1632812 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| |||||| || ||| |||||| || || || Sbjct 1632813 ATTCCTTCCTTGTCTTGAATCTTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCAACT 1632872 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAA 43101 || | || ||||| || || |||| || || |||||| Sbjct 1632873 TCCAAGGTAATAGTCTTACCAGTTAAGGTCTTAACAAAA 1632911 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 |||||||||||| | || |||||||| | |||||| || || | || ||| |||| Sbjct 1873705 TAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTC 1873646 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 || ||||| || || ||||| || | || || ||||| | || | |||||| || || Sbjct 1873645 TTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTC 1873586 Query 43017 GCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAG 43075 ||| |||| ||||| || ||| ||||| | || || |||| || || | Sbjct 1873585 TTGAATCTTACTC-TTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGG 1873527 Query 43076 TTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || | || ||||| ||||||||||| Sbjct 1873526 TTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 |||||||||||| | || |||||||| | |||||| || || | || ||| |||| Sbjct 1873933 TAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTC 1873874 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 || ||||| || || ||||| || | || || ||||| | || | |||||| || || Sbjct 1873873 TTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTC 1873814 Query 43017 GCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAG 43075 ||| |||| ||||| || ||| ||||| | || || |||| || || | Sbjct 1873813 TTGAATCTTACTC-TTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGG 1873755 Query 43076 TTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || | || ||||| ||||||||||| Sbjct 1873754 TTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 |||||||||||| | || |||||||| | |||||| || || | || ||| |||| Sbjct 1874161 TAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTC 1874102 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 || ||||| || || ||||| || | || || ||||| | || | |||||| || || Sbjct 1874101 TTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTC 1874042 Query 43017 GCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAG 43075 ||| |||| ||||| || ||| ||||| | || || |||| || || | Sbjct 1874041 TTGAATCTTACTC-TTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGG 1873983 Query 43076 TTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || | || ||||| ||||||||||| Sbjct 1873982 TTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949 >seq4 Length=1903616 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | ||| |||||||||| || |||||||| | ||||| || || Sbjct 1735258 CCACCACGGAGACGTAAGACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAA 1735317 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || ||||| || || || ||||| ||||| || |||||||| | || Sbjct 1735318 AGGGTTCTTCCATCTTCCAACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 1735377 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| ||||| || ||| ||||| || ||| || Sbjct 1735378 ATTCCTTCTTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCAACC 1735437 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || || || || || || || ||||||||||| Sbjct 1735438 TCGAGAGTAATAGTCTTACCCGTAAGGGTCTTAACGAAAATTTGCAT 1735484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369530280870