Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 149 9e-31 >seq2 Length=2234776 Score = 149 bits (164), Expect = 9e-31 Identities = 392/591 (66%), Gaps = 8/591 (1%) Strand=Plus/Plus Query 124986 AGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAG 125045 |||||| || || || || | |||||||| || ||| ||||||| || || ||| | Sbjct 2160690 AGATTTGTTCTTTTCCCAATTAAATATCATGAAATCTGGCAAATGTATAAGAAAGCTGAA 2160749 Query 125046 GCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT 125105 || ||||| ||||| | |||||| | || | ||||| | | |||||||| | Sbjct 2160750 GCTTCCTTCTGGACTGCAGAAGAGATTGACTTAGGAAAGGATGTTCATGATTGGGAAAAC 2160809 Query 125106 CGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCC 125165 ||||||| ||| | ||| || ||||| || | || || |||||||| | || Sbjct 2160810 CGTTTGAATGACAATGAAAGATTTTTTATTTCAAGAGTCTTAGCTTTCTTTGCTGCATCT 2160869 Query 125166 GATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGA-GTTGACCATTCCAG 125223 ||||| || || || || ||| | || || | ||||| || ||| | | |||| | Sbjct 2160870 GATGGTATTGTTAATGAAAATTTAGTAGAAAAC-TTCTCAGCTGAAGTTCAAC-TTCCTG 2160927 Query 125224 AGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACT 125283 | | |||||| || || |||||||||||||| || ||| | ||||| |||| |||| Sbjct 2160928 AAGCCAAGTGCTTCTATGGTTTCCAAATCATGATGGAAAACATCCACTCTGAAACTTACT 2160987 Query 125284 CTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACAT--GCTCTTTAACGC 125341 | ||||||||| | || || || | ||| | || || || | || || || Sbjct 2160988 CCTTACTGATTGATACTTATATCAAGGA--CACAAAGGAAGCAGATTATTTATTCAATGC 2161045 Query 125342 AATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA 125401 || || | | || | || |||||||| |||||| | || |||||| |||| Sbjct 2161046 TATTGAAAACATTCCATGCATCAAACAAAAGGCTGAATGGGCTTTACGATGGATCAATGA 2161105 Query 125402 CGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT 125461 ||| | | | || | || ||| | || || || || || || || || || ||||| Sbjct 2161106 CGATGAAGCATTGTTTGGTGAAAGATTAGTTGCCTTTGCTGCTGTTGAAGGTATTTTCTT 2161165 Query 125462 TTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||| ||||| | ||||| |||||||||||| | || | ||||| || || || Sbjct 2161166 CTCGGGCTCGTTTGCTTCTATCTTCTGGCTCAAGAAGAGAGGTTTAATGCCTGGTCTCAC 2161225 Query 125522 GCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | |||||| || || | |||| || || |||| ||||||||| Sbjct 2161226 ATTCTCTAACGAATTGATCTGCAGAGATGAAGGTTTACATACTGACTTTGC 2161276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059061051400