Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq1 125 5e-24
seq4 116 3e-21
>seq1
Length=2480924
Score = 125 bits (138), Expect = 5e-24
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || ||||| || || || || ||||| |||||||| || | | |||| |||||
Sbjct 1632708 AAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTTCCGTCT 1632767
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|||||||| || ||||| | |||||||| ||||| || |||||||||||| |||||
Sbjct 1632768 TCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTGTCT 1632827
Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331
||| ||||| || ||| | || || || ||| | ||| || || |||||||| ||
Sbjct 1632828 TGAATCTTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCAACTTCCAAGGTAATAGTC 1632887
Query 15332 TTACCTGTCAGAGTTTTTACAAAA 15355
||||| || | || || ||||||
Sbjct 1632888 TTACCAGTTAAGGTCTTAACAAAA 1632911
Score = 120 bits (132), Expect = 2e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||| | | ||| || ||||| | || || || ||||| || ||||| || |
Sbjct 1873719 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1873660
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| ||| ||||||||||||| || ||||| | || | | ||| || || ||||
Sbjct 1873659 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1873600
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| ||| || ||||| ||| | || || || || ||| ||
Sbjct 1873599 ATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACT 1873540
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
||||| || ||||||||||| |||| || || || ||||||||||||
Sbjct 1873539 TCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCATA 1873492
Score = 120 bits (132), Expect = 2e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||| | | ||| || ||||| | || || || ||||| || ||||| || |
Sbjct 1873947 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1873888
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| ||| ||||||||||||| || ||||| | || | | ||| || || ||||
Sbjct 1873887 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1873828
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| ||| || ||||| ||| | || || || || ||| ||
Sbjct 1873827 ATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACT 1873768
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
||||| || ||||||||||| |||| || || || ||||||||||||
Sbjct 1873767 TCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCATA 1873720
Score = 118 bits (130), Expect = 8e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||| | | ||| || ||||| | || || || ||||| || ||||| || |
Sbjct 1874175 CCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1874116
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| ||| ||||||||||||| || ||||| | || | | ||| || || ||||
Sbjct 1874115 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1874056
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| ||| || ||||| ||| | || || || || ||| ||
Sbjct 1874055 ATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACT 1873996
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
||||| || ||||||||||| |||| || || || ||||||||||||
Sbjct 1873995 TCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCATA 1873948
Score = 113 bits (124), Expect = 3e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||| | | ||| || ||||| | || || || ||||| || ||||| || |
Sbjct 1873491 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1873432
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| ||| ||||||||||||| || ||||| | || | | ||| || || ||||
Sbjct 1873431 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1873372
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| ||| || ||||| ||| | || || || || ||| ||
Sbjct 1873371 ATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACT 1873312
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
||||| || ||||||||||| |||| || || ||||| || ||||| ||
Sbjct 1873311 TCTAATGTGATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCATGTT 1873262
>seq4
Length=1903616
Score = 116 bits (128), Expect = 3e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210
||| || ||||| ||||| || || ||||| |||||||| || || |||| | ||
Sbjct 1735272 TAAGACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCATC 1735331
Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270
||| || || || ||||| | |||||||||||||| || |||||||||||||||||
Sbjct 1735332 TTCCAACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTC 1735391
Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330
||| || ||| ||| | || ||||| || | || || || | ||||| ||
Sbjct 1735392 TTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATAGT 1735451
Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369
||||| || || || || || ||||||||||| ||||
Sbjct 1735452 CTTACCCGTAAGGGTCTTAACGAAAATTTGCATGATTGA 1735490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362179133789115
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |