Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq2 260 1e-64
>seq2
Length=2234776
Score = 260 bits (288), Expect = 1e-64
Identities = 602/895 (67%), Gaps = 29/895 (3%)
Strand=Plus/Minus
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
|||||||| || |||||| ||||| || || || ||||| || | || || ||||||
Sbjct 2161570 TTTTGATAATCAGAAACTCTCTTTTCGAAGAAATTAGTTTTACCAGCCAAAGAGATATTT 2161511
Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTAT---TTTTTACACCCTAATTCTAGT 12976
||||| || || || ||||| ||| | | ||| || || || || | ||
Sbjct 2161510 TCCATGAAGTCAAATGGATTG---GAAGAGTTGTAAACCTTCTTGTTGCCCAAAGCAAGA 2161454
Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036
| ||||| || |||||||| || | ||||| ||| | | |||||||| |||| |
Sbjct 2161453 AGTAATCTATCTGCAACAAATTCAACATACTGACACATGAGCTTGCAGTTCATACCTAAT 2161394
Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096
|| ||||||| ||| || || || || ||||| || || || ||||| |||
Sbjct 2161393 AAAGAGACAGGCAAAGCATCGGTGAAGTAGCCCTTTTCGATTTCGACAGCTTCAGTAATG 2161334
Query 13097 ATGTCTCTT-----ATTACGTTCTCTAATGGAGGATTTGAT-AGATGCTTAAACATCATA 13150
|| || || || || || | | | ||| | | ||| || | ||
Sbjct 2161333 AT--CTTTTCAACAATAACAGCGTC--AGGTCTG--TTGTTCAAATGAGAGAATAACAAG 2161280
Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210
|| ||||| ||| || || ||||||||||| | || | ||||| || ||||| |||
Sbjct 2161279 CAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAGAATGTGAGA 2161220
Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270
|| ||||| | |||| || || | ||| || |||| ||||||||| ||||| || ||
Sbjct 2161219 CCAGGCATTAAACCTCTCTTCTTGAGCCAGAAGATAGAAGCAAACGAGCCCGAGAAGAAA 2161160
Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT 13330
|| |||||||| || ||||| || | || ||||||||| || | || | || |
Sbjct 2161159 ATACCTTCAACAGCAGCAAAGGCAACTAATCTTTCACCAAACA-ATGCTTCATCGTCATT 2161101
Query 13331 -ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389
||||| | ||||| | || |||||||| | ||| || ||||| || || ||
Sbjct 2161100 GATCCATCGTAAAGCCCATTCAGCCTTTTGTTTGATGCATGGAATGTTTTCAATAGCATT 2161041
Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACAT 13449
|||||||||| | |||||| |||| ||||||||||| |||| |||| || |
Sbjct 2161040 GAATAAATAATCTGCTTCCTTTGTGTCCTTGATATAAGTATCAATCAGTAAGGAGTAAGT 2160981
Query 13450 TTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATAC 13509
||| || || || ||||||||| |||||||||||||| || || | || || | |
Sbjct 2160980 TTCAGAGTGGATGTTTTCCATCATGATTTGGAAACCATAGAAGCACTTGGCTTCAGGAAG 2160921
Query 13510 CTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGC 13569
|||||||| | | || ||||| |||| ||||| ||||| || || ||| |||||
Sbjct 2160920 TTGAACTTCAGCTGAGAAGTTTTCTACTAAATTTTCATTAACAATACCATCAGATGCAGC 2160861
Query 13570 aaaaaaaGC-AAGTATGTGCTT--AATAAAttttttttCGTTTTCTGACAA---CTTTAA 13623
||| ||||| ||| | ||| |||||| | |||| || || ||| |||
Sbjct 2160860 AAAGAAAGCTAAGACT---CTTGAAATAAAAAATCTTTCATTGTCATTCAAACGGTTTTC 2160804
Query 13624 CCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGC 13683
|||||| ||| ||| ||| ||| || | ||| || | ||||| || ||||| ||||
Sbjct 2160803 CCAATCATGAACATCCTTTCCTAAGTCAATCTCTTCTGCAGTCCAGAAGGAAGCTTCAGC 2160744
Query 13684 CTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTATCTT 13738
||||||||||| ||| || || | ||| ||| || || | ||| |||||
Sbjct 2160743 TTTCTTATACATTTGCCAGATTTCATGATATTTAATTGGGAAAAGAACAAATCTT 2160689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430982321211030
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |