Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 260 1e-64 >seq2 Length=2234776 Score = 260 bits (288), Expect = 1e-64 Identities = 602/895 (67%), Gaps = 29/895 (3%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||||||| || |||||| ||||| || || || ||||| || | || || |||||| Sbjct 2161570 TTTTGATAATCAGAAACTCTCTTTTCGAAGAAATTAGTTTTACCAGCCAAAGAGATATTT 2161511 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTAT---TTTTTACACCCTAATTCTAGT 12976 ||||| || || || ||||| ||| | | ||| || || || || | || Sbjct 2161510 TCCATGAAGTCAAATGGATTG---GAAGAGTTGTAAACCTTCTTGTTGCCCAAAGCAAGA 2161454 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | ||||| || |||||||| || | ||||| ||| | | |||||||| |||| | Sbjct 2161453 AGTAATCTATCTGCAACAAATTCAACATACTGACACATGAGCTTGCAGTTCATACCTAAT 2161394 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 || ||||||| ||| || || || || ||||| || || || ||||| ||| Sbjct 2161393 AAAGAGACAGGCAAAGCATCGGTGAAGTAGCCCTTTTCGATTTCGACAGCTTCAGTAATG 2161334 Query 13097 ATGTCTCTT-----ATTACGTTCTCTAATGGAGGATTTGAT-AGATGCTTAAACATCATA 13150 || || || || || || | | | ||| | | ||| || | || Sbjct 2161333 AT--CTTTTCAACAATAACAGCGTC--AGGTCTG--TTGTTCAAATGAGAGAATAACAAG 2161280 Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || ||||| ||| || || ||||||||||| | || | ||||| || ||||| ||| Sbjct 2161279 CAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAGAATGTGAGA 2161220 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || ||||| | |||| || || | ||| || |||| ||||||||| ||||| || || Sbjct 2161219 CCAGGCATTAAACCTCTCTTCTTGAGCCAGAAGATAGAAGCAAACGAGCCCGAGAAGAAA 2161160 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT 13330 || |||||||| || ||||| || | || ||||||||| || | || | || | Sbjct 2161159 ATACCTTCAACAGCAGCAAAGGCAACTAATCTTTCACCAAACA-ATGCTTCATCGTCATT 2161101 Query 13331 -ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389 ||||| | ||||| | || |||||||| | ||| || ||||| || || || Sbjct 2161100 GATCCATCGTAAAGCCCATTCAGCCTTTTGTTTGATGCATGGAATGTTTTCAATAGCATT 2161041 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACAT 13449 |||||||||| | |||||| |||| ||||||||||| |||| |||| || | Sbjct 2161040 GAATAAATAATCTGCTTCCTTTGTGTCCTTGATATAAGTATCAATCAGTAAGGAGTAAGT 2160981 Query 13450 TTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATAC 13509 ||| || || || ||||||||| |||||||||||||| || || | || || | | Sbjct 2160980 TTCAGAGTGGATGTTTTCCATCATGATTTGGAAACCATAGAAGCACTTGGCTTCAGGAAG 2160921 Query 13510 CTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGC 13569 |||||||| | | || ||||| |||| ||||| ||||| || || ||| ||||| Sbjct 2160920 TTGAACTTCAGCTGAGAAGTTTTCTACTAAATTTTCATTAACAATACCATCAGATGCAGC 2160861 Query 13570 aaaaaaaGC-AAGTATGTGCTT--AATAAAttttttttCGTTTTCTGACAA---CTTTAA 13623 ||| ||||| ||| | ||| |||||| | |||| || || ||| ||| Sbjct 2160860 AAAGAAAGCTAAGACT---CTTGAAATAAAAAATCTTTCATTGTCATTCAAACGGTTTTC 2160804 Query 13624 CCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGC 13683 |||||| ||| ||| ||| ||| || | ||| || | ||||| || ||||| |||| Sbjct 2160803 CCAATCATGAACATCCTTTCCTAAGTCAATCTCTTCTGCAGTCCAGAAGGAAGCTTCAGC 2160744 Query 13684 CTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTATCTT 13738 ||||||||||| ||| || || | ||| ||| || || | ||| ||||| Sbjct 2160743 TTTCTTATACATTTGCCAGATTTCATGATATTTAATTGGGAAAAGAACAAATCTT 2160689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982321211030