Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2 206 6e-48
seq1 161 2e-34
seq4 140 7e-28
>seq2
Length=2234776
Score = 206 bits (228), Expect = 6e-48
Identities = 425/619 (69%), Gaps = 30/619 (5%)
Strand=Plus/Plus
Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759
|||||||| | || ||||| | || ||| || ||| ||||| || | || |
Sbjct 2160690 AGATTTGTTCTTTTCCCAATTAAATATCATGAAATCTGGCAAATGTATAAGAAAGCTGAA 2160749
Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC------TTAATAGATTGG 268813
||||| || ||||||| |||||| ||| || |||| || || || ||||||
Sbjct 2160750 GCTTCCTTCTGGACTGCAGAAGA----GAT-TGACTTAGGAAAGGATGTTCAT-GATTGG 2160803
Query 268814 AAAAAT--TTAAAACCAGAA-GAAAGAAGATTTATATCTTATATTCTT-GCGTTTTTTGC 268869
|||| || || | || |||||| ||||| || | | |||| || || |||||
Sbjct 2160804 GAAAACCGTTTGAATGACAATGAAAGATTTTTTATTTCA-AGAGTCTTAGCTTTCTTTGC 2160862
Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929
| ||||||||| ||||| |||||| ||||||| || |||| || || || |
Sbjct 2160863 TGCATCTGATGGTATTGTTAATGAAAATTTAGTAGAAAACTTCTCAGCTGAAGTTCAACT 2160922
Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989
||||||||||| || || || || ||||| || || ||||| || || || || |
Sbjct 2160923 TCCTGAAGCCAAGTGCTTCTATGGTTTCCAAATCATGATGGAAAACATCCACTCTGAAAC 2160982
Query 268990 GTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTT-- 269047
||| || | || ||||||||||| | || | || ||| ||| |||||
Sbjct 2160983 TTACTCCTTACTGATTGATACTTATATCAAGGACACAAAGGAAGC----AGATTATTTAT 2161038
Query 269048 TC--TTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGG 269104
|| | |||| || ||| | | || | | | |||| ||||||||||| | ||||
Sbjct 2161039 TCAATGCTATTGAAAACATTCCA-TGCATCAAACAAAAGGCTGAATGGGCTTTACGATGG 2161097
Query 269105 ATAAA---CGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGT 269161
|| || |||| || | || ||||| |||||||| ||||| ||||| ||||||
Sbjct 2161098 ATCAATGACGATGAAGCATTGTTTGGTGAAAGATTAGTTGCCTTTGCTGCTGTTGAAGGT 2161157
Query 269162 ATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCA 269221
|| ||||| ||||| || ||||| ||||||| ||| | ||||| ||||| | |||||
Sbjct 2161158 ATTTTCTTCTCGGGCTCGTTTGCTTCTATCTTCTGGCTCAAGAAGAGAGGTTTAATGCCT 2161217
Query 269222 GGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCT 269281
|| | || ||||||||||||||||| |||| || ||||||||||| ||||| |||
Sbjct 2161218 GGTCTCACATTCTCTAACGAATTGATCTGCAGAGATGAAGGTTTACATACTGACTTTGCT 2161277
Query 269282 TGTTTATTATTTACTAATT 269300
|| || ||||| || |||
Sbjct 2161278 TGCTTGTTATTCTCTCATT 2161296
Score = 89.7 bits (98), Expect = 1e-12
Identities = 125/173 (72%), Gaps = 2/173 (1%)
Strand=Plus/Plus
Query 165098 GATAAGGATGAATGGAATACTTGGA-ATAAAATACACGATCCTGTTTTACATATAGAGCT 165156
||||| || || |||| |||||||| | |||| ||||||||||||||||| || |
Sbjct 1397856 GATAAAGACGAGTGGACTACTTGGACAGCCCGTACA-GATCCTGTTTTACATATTGAATT 1397914
Query 165157 AAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAGAT 165216
| | || ||||||||||| | |||||||||| |||| ||||| | ||| |||||
Sbjct 1397915 ACGCAGGTGGGCAGATATATTAGTGATAGCACCACTAACTGCAAATACTTTGAGTAAGAT 1397974
Query 165217 AGCTAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATA 165269
||| ||| | ||| |||| | || || | | || ||||| |||||||
Sbjct 1397975 AGCCCTTGGTTTATGTGATAATCTATTGACTAATGTGGTCAGAGCTTGGAATA 1398027
>seq1
Length=2480924
Score = 161 bits (178), Expect = 2e-34
Identities = 176/234 (75%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||||||| | | || | ||||||||| ||||| || |||||||| |||||
Sbjct 1873494 ATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCC 1873435
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||||||||| |||||||||| ||| ||||||||||| || || || || ||||| ||
Sbjct 1873434 GATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGT 1873375
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || |||||||| || ||||| || | || || | |||
Sbjct 1873374 GGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCA 1873315
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| |||| ||| || || |||||||| | || || ||||| |||||||| |||
Sbjct 1873314 ACTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCATGTTG 1873261
Score = 149 bits (164), Expect = 1e-30
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||||||| | | || | ||||||||| ||||| || |||||||| |||||
Sbjct 1873722 ATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCC 1873663
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||||||||| |||||||||| ||| ||||||||||| || || || || ||||| ||
Sbjct 1873662 GATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGT 1873603
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || |||||||| || ||||| || | || || | |||
Sbjct 1873602 GGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCA 1873543
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| |||| ||| || || |||||||| | || || || || || |||||
Sbjct 1873542 ACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493
Score = 149 bits (164), Expect = 1e-30
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||||||| | | || | ||||||||| ||||| || |||||||| |||||
Sbjct 1873950 ATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCC 1873891
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||||||||| |||||||||| ||| ||||||||||| || || || || ||||| ||
Sbjct 1873890 GATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGT 1873831
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || |||||||| || ||||| || | || || | |||
Sbjct 1873830 GGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCA 1873771
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| |||| ||| || || |||||||| | || || || || || |||||
Sbjct 1873770 ACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721
Score = 145 bits (160), Expect = 2e-29
Identities = 147/189 (78%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || || ||||| || |||||||| | |||||| |||||||||| ||| || |||
Sbjct 1632723 GTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTTCCGTCTTCTAATTGCTTACCA 1632782
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | ||||||||| || || |||||||| || || |||||||| ||||||
Sbjct 1632783 GCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGAATCTT-GCTTTT 1632841
Query 104483 -ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
||||| || | || ||| || ||| || || | ||||||||||||||||| | ||
Sbjct 1632842 GACATTGTCAATAGTGTCGGAAGATTCAACTTCCAAGGTAATAGTCTTACCAGTTAAGGT 1632901
Query 104542 TTTTACAAA 104550
|| |||||
Sbjct 1632902 CTTAACAAA 1632910
Score = 143 bits (158), Expect = 6e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||| || | | || | ||||||||| ||||| || |||||||| ||||| |||
Sbjct 1874175 CCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1874116
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
||||||| |||||||||| ||| ||||||||||| || || || || ||||| || ||
Sbjct 1874115 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1874056
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| ||||| || || |||||||| || ||||| || | || || | ||| ||
Sbjct 1874055 ATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACT 1873996
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| ||| || || |||||||| | || || || || || |||||
Sbjct 1873995 TCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949
>seq4
Length=1903616
Score = 140 bits (154), Expect = 7e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| || || || || |||||||| || ||||| || ||||| | || || |||
Sbjct 1735288 GTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCATCTTCCAACTGCTTACCA 1735347
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | |||||||| ||||| ||||||||||| || |||||||| | ||
Sbjct 1735348 GCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTAGACTTG 1735407
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || || || ||||| || |||||||||||||| ||||| ||
Sbjct 1735408 ACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATAGTCTTACCCGTAAGGGTC 1735467
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 1735468 TTAACGAAAATTTGCAT 1735484
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151398178715620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |