Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 206 6e-48 seq1 161 2e-34 seq4 140 7e-28 >seq2 Length=2234776 Score = 206 bits (228), Expect = 6e-48 Identities = 425/619 (69%), Gaps = 30/619 (5%) Strand=Plus/Plus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 |||||||| | || ||||| | || ||| || ||| ||||| || | || | Sbjct 2160690 AGATTTGTTCTTTTCCCAATTAAATATCATGAAATCTGGCAAATGTATAAGAAAGCTGAA 2160749 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC------TTAATAGATTGG 268813 ||||| || ||||||| |||||| ||| || |||| || || || |||||| Sbjct 2160750 GCTTCCTTCTGGACTGCAGAAGA----GAT-TGACTTAGGAAAGGATGTTCAT-GATTGG 2160803 Query 268814 AAAAAT--TTAAAACCAGAA-GAAAGAAGATTTATATCTTATATTCTT-GCGTTTTTTGC 268869 |||| || || | || |||||| ||||| || | | |||| || || ||||| Sbjct 2160804 GAAAACCGTTTGAATGACAATGAAAGATTTTTTATTTCA-AGAGTCTTAGCTTTCTTTGC 2160862 Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929 | ||||||||| ||||| |||||| ||||||| || |||| || || || | Sbjct 2160863 TGCATCTGATGGTATTGTTAATGAAAATTTAGTAGAAAACTTCTCAGCTGAAGTTCAACT 2160922 Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989 ||||||||||| || || || || ||||| || || ||||| || || || || | Sbjct 2160923 TCCTGAAGCCAAGTGCTTCTATGGTTTCCAAATCATGATGGAAAACATCCACTCTGAAAC 2160982 Query 268990 GTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTT-- 269047 ||| || | || ||||||||||| | || | || ||| ||| ||||| Sbjct 2160983 TTACTCCTTACTGATTGATACTTATATCAAGGACACAAAGGAAGC----AGATTATTTAT 2161038 Query 269048 TC--TTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGG 269104 || | |||| || ||| | | || | | | |||| ||||||||||| | |||| Sbjct 2161039 TCAATGCTATTGAAAACATTCCA-TGCATCAAACAAAAGGCTGAATGGGCTTTACGATGG 2161097 Query 269105 ATAAA---CGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGT 269161 || || |||| || | || ||||| |||||||| ||||| ||||| |||||| Sbjct 2161098 ATCAATGACGATGAAGCATTGTTTGGTGAAAGATTAGTTGCCTTTGCTGCTGTTGAAGGT 2161157 Query 269162 ATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCA 269221 || ||||| ||||| || ||||| ||||||| ||| | ||||| ||||| | ||||| Sbjct 2161158 ATTTTCTTCTCGGGCTCGTTTGCTTCTATCTTCTGGCTCAAGAAGAGAGGTTTAATGCCT 2161217 Query 269222 GGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCT 269281 || | || ||||||||||||||||| |||| || ||||||||||| ||||| ||| Sbjct 2161218 GGTCTCACATTCTCTAACGAATTGATCTGCAGAGATGAAGGTTTACATACTGACTTTGCT 2161277 Query 269282 TGTTTATTATTTACTAATT 269300 || || ||||| || ||| Sbjct 2161278 TGCTTGTTATTCTCTCATT 2161296 Score = 89.7 bits (98), Expect = 1e-12 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 165098 GATAAGGATGAATGGAATACTTGGA-ATAAAATACACGATCCTGTTTTACATATAGAGCT 165156 ||||| || || |||| |||||||| | |||| ||||||||||||||||| || | Sbjct 1397856 GATAAAGACGAGTGGACTACTTGGACAGCCCGTACA-GATCCTGTTTTACATATTGAATT 1397914 Query 165157 AAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAGAT 165216 | | || ||||||||||| | |||||||||| |||| ||||| | ||| ||||| Sbjct 1397915 ACGCAGGTGGGCAGATATATTAGTGATAGCACCACTAACTGCAAATACTTTGAGTAAGAT 1397974 Query 165217 AGCTAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATA 165269 ||| ||| | ||| |||| | || || | | || ||||| ||||||| Sbjct 1397975 AGCCCTTGGTTTATGTGATAATCTATTGACTAATGTGGTCAGAGCTTGGAATA 1398027 >seq1 Length=2480924 Score = 161 bits (178), Expect = 2e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| | | || | ||||||||| ||||| || |||||||| ||||| Sbjct 1873494 ATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCC 1873435 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||||||||| |||||||||| ||| ||||||||||| || || || || ||||| || Sbjct 1873434 GATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGT 1873375 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||| || ||||| || | || || | ||| Sbjct 1873374 GGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCA 1873315 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||| ||| || || |||||||| | || || ||||| |||||||| ||| Sbjct 1873314 ACTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCATGTTG 1873261 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| | | || | ||||||||| ||||| || |||||||| ||||| Sbjct 1873722 ATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCC 1873663 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||||||||| |||||||||| ||| ||||||||||| || || || || ||||| || Sbjct 1873662 GATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGT 1873603 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||| || ||||| || | || || | ||| Sbjct 1873602 GGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCA 1873543 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| ||| || || |||||||| | || || || || || ||||| Sbjct 1873542 ACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| | | || | ||||||||| ||||| || |||||||| ||||| Sbjct 1873950 ATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCC 1873891 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||||||||| |||||||||| ||| ||||||||||| || || || || ||||| || Sbjct 1873890 GATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGT 1873831 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||| || ||||| || | || || | ||| Sbjct 1873830 GGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCA 1873771 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| ||| || || |||||||| | || || || || || ||||| Sbjct 1873770 ACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721 Score = 145 bits (160), Expect = 2e-29 Identities = 147/189 (78%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || ||||| || |||||||| | |||||| |||||||||| ||| || ||| Sbjct 1632723 GTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTTCCGTCTTCTAATTGCTTACCA 1632782 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||||||||| || || |||||||| || || |||||||| |||||| Sbjct 1632783 GCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGAATCTT-GCTTTT 1632841 Query 104483 -ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || ||| || ||| || || | ||||||||||||||||| | || Sbjct 1632842 GACATTGTCAATAGTGTCGGAAGATTCAACTTCCAAGGTAATAGTCTTACCAGTTAAGGT 1632901 Query 104542 TTTTACAAA 104550 || ||||| Sbjct 1632902 CTTAACAAA 1632910 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || | | || | ||||||||| ||||| || |||||||| ||||| ||| Sbjct 1874175 CCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1874116 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||||| |||||||||| ||| ||||||||||| || || || || ||||| || || Sbjct 1874115 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1874056 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || |||||||| || ||||| || | || || | ||| || Sbjct 1874055 ATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACT 1873996 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||| || || |||||||| | || || || || || ||||| Sbjct 1873995 TCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949 >seq4 Length=1903616 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || |||||||| || ||||| || ||||| | || || ||| Sbjct 1735288 GTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCATCTTCCAACTGCTTACCA 1735347 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | |||||||| ||||| ||||||||||| || |||||||| | || Sbjct 1735348 GCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTAGACTTG 1735407 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| || |||||||||||||| ||||| || Sbjct 1735408 ACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATAGTCTTACCCGTAAGGGTC 1735467 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 1735468 TTAACGAAAATTTGCAT 1735484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398178715620