Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 seq4 89.7 5e-13 >seq1 Length=2480924 Score = 125 bits (138), Expect = 6e-24 Identities = 174/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| | || |||||||| || || || ||||||||||| | Sbjct 1873503 AAAATTTGCATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATA 1873444 Query 94829 TTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || |||| ||| | || || | || ||||| ||||||| | ||||| Sbjct 1873443 TTGTAGTCCG--ATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTT 1873386 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||||||||| ||||||||||| ||||| | ||| || |||||| | | | ||||| Sbjct 1873385 GCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGT 1873326 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | || || || | ||||||||||| ||||| | || || ||||||||||||| Sbjct 1873325 CTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCA 1873266 Query 95007 TG 95008 || Sbjct 1873265 TG 1873264 Score = 116 bits (128), Expect = 3e-21 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| | || |||||||| || || || ||||||||||| | Sbjct 1873731 AAAATTTGCATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATA 1873672 Query 94829 TTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || |||| ||| | || || | || ||||| ||||||| | ||||| Sbjct 1873671 TTGTAGTCCG--ATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTT 1873614 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||||||||| ||||||||||| ||||| | ||| || |||||| | | | ||||| Sbjct 1873613 GCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGT 1873554 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | || || || | ||||||||||| ||||| | || ||||| || || |||| Sbjct 1873553 CTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCA 1873494 Query 95007 T 95007 | Sbjct 1873493 T 1873493 Score = 116 bits (128), Expect = 3e-21 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| | || |||||||| || || || ||||||||||| | Sbjct 1873959 AAAATTTGCATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATA 1873900 Query 94829 TTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || |||| ||| | || || | || ||||| ||||||| | ||||| Sbjct 1873899 TTGTAGTCCG--ATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTT 1873842 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||||||||| ||||||||||| ||||| | ||| || |||||| | | | ||||| Sbjct 1873841 GCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGT 1873782 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | || || || | ||||||||||| ||||| | || ||||| || || |||| Sbjct 1873781 CTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCA 1873722 Query 95007 T 95007 | Sbjct 1873721 T 1873721 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || |||||||| || || || ||||||||||| | || || || Sbjct 1874175 CCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCG-- 1874118 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 |||| ||| | || || | || ||||| ||||||| | ||||||||||||||| | Sbjct 1874117 ATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTG 1874058 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||||||||| ||||| | ||| || |||||| | | | |||||| | || | Sbjct 1874057 GAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAA 1873998 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||||||||||| ||||| | || ||||| || || ||||| Sbjct 1873997 CTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949 >seq4 Length=1903616 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || || ||||| || | || ||||||||||| | ||| || || | || | | Sbjct 1735270 CGTAAGACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCA 1735329 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || || ||||||| || | ||| |||||||||||||| ||||||||| Sbjct 1735330 TCTTCCAACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCTTTG 1735389 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || | |||||| | | | ||||| | || || || | || || Sbjct 1735390 TCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATA 1735449 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || ||||| || || || || || |||||| || Sbjct 1735450 GTCTTACCCGTAAGGGTCTTAACGAAAATTTGCATGATT 1735488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291115945400