Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq1 125 6e-24
seq4 89.7 5e-13
>seq1
Length=2480924
Score = 125 bits (138), Expect = 6e-24
Identities = 174/242 (72%), Gaps = 4/242 (2%)
Strand=Plus/Minus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || || ||||| | || |||||||| || || || ||||||||||| |
Sbjct 1873503 AAAATTTGCATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATA 1873444
Query 94829 TTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886
|| || || |||| ||| | || || | || ||||| ||||||| | |||||
Sbjct 1873443 TTGTAGTCCG--ATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTT 1873386
Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946
|||||||||| ||||||||||| ||||| | ||| || |||||| | | | |||||
Sbjct 1873385 GCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGT 1873326
Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006
| | || || || | ||||||||||| ||||| | || || |||||||||||||
Sbjct 1873325 CTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCA 1873266
Query 95007 TG 95008
||
Sbjct 1873265 TG 1873264
Score = 116 bits (128), Expect = 3e-21
Identities = 171/241 (71%), Gaps = 4/241 (2%)
Strand=Plus/Minus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || || ||||| | || |||||||| || || || ||||||||||| |
Sbjct 1873731 AAAATTTGCATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATA 1873672
Query 94829 TTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886
|| || || |||| ||| | || || | || ||||| ||||||| | |||||
Sbjct 1873671 TTGTAGTCCG--ATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTT 1873614
Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946
|||||||||| ||||||||||| ||||| | ||| || |||||| | | | |||||
Sbjct 1873613 GCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGT 1873554
Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006
| | || || || | ||||||||||| ||||| | || ||||| || || ||||
Sbjct 1873553 CTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCA 1873494
Query 95007 T 95007
|
Sbjct 1873493 T 1873493
Score = 116 bits (128), Expect = 3e-21
Identities = 171/241 (71%), Gaps = 4/241 (2%)
Strand=Plus/Minus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || || ||||| | || |||||||| || || || ||||||||||| |
Sbjct 1873959 AAAATTTGCATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATA 1873900
Query 94829 TTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886
|| || || |||| ||| | || || | || ||||| ||||||| | |||||
Sbjct 1873899 TTGTAGTCCG--ATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTT 1873842
Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946
|||||||||| ||||||||||| ||||| | ||| || |||||| | | | |||||
Sbjct 1873841 GCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGT 1873782
Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006
| | || || || | ||||||||||| ||||| | || ||||| || || ||||
Sbjct 1873781 CTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCA 1873722
Query 95007 T 95007
|
Sbjct 1873721 T 1873721
Score = 111 bits (122), Expect = 1e-19
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || |||||||| || || || ||||||||||| | || || ||
Sbjct 1874175 CCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCG-- 1874118
Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
|||| ||| | || || | || ||||| ||||||| | ||||||||||||||| |
Sbjct 1874117 ATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTG 1874058
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
|||||||||| ||||| | ||| || |||||| | | | |||||| | || |
Sbjct 1874057 GAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAA 1873998
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || | ||||||||||| ||||| | || ||||| || || |||||
Sbjct 1873997 CTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949
>seq4
Length=1903616
Score = 89.7 bits (98), Expect = 5e-13
Identities = 151/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|| || ||||| || | || ||||||||||| | ||| || || | || | |
Sbjct 1735270 CGTAAGACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCA 1735329
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| |||| ||| || || ||||||| || | ||| |||||||||||||| |||||||||
Sbjct 1735330 TCTTCCAACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCTTTG 1735389
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||| || | |||||| | | | ||||| | || || || | || ||
Sbjct 1735390 TCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATA 1735449
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011
|| || || ||||| || || || || || |||||| ||
Sbjct 1735450 GTCTTACCCGTAAGGGTCTTAACGAAAATTTGCATGATT 1735488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448291115945400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |