Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9 136 6e-28 seq3 122 1e-23 >seq9 Length=942090 Score = 136 bits (150), Expect = 6e-28 Identities = 194/271 (72%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| || | ||| |||||| |||||||||||||| ||||| || || ||||| Sbjct 357705 GCTAAGCGTCACCGAAAGAT-TCTTCGTGATAACATCCAAGGTATCACTAAACCTGCTAT 357647 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | | || | | ||||| || |||||| |||||| ||| |||| ||||| | Sbjct 357646 CAGAAGATTAGCAAGAAGAGGTGGTGTTAAGCGTATCTCTGCTTTGATCTACGAAGAAGT 357587 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | | |||||||||| ||| | | | ||||| |||||| || ||||||||| Sbjct 357586 TAGAGGTGTTTTGAAGTCTTTCTTGGAATCAGTTATAAGAGATGCTGTCACCTATACCGA 357527 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||||| | |||||||| || || | ||| | |||||||| | || | ||||| Sbjct 357526 ACATGCTAAGAGAAAGACTGTTACATCATTAGATGTTGTCTATGCTCTTAAGAGACAAGG 357467 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 | | |||| ||||| || ||||| || Sbjct 357466 AAGAACCCTTTAYGGTTTCGGTGGTTAAACT 357436 >seq3 Length=2048561 Score = 122 bits (134), Expect = 1e-23 Identities = 162/224 (72%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||| |||||| |||||||| ||||| || |||||||| |||||| | | |||| | Sbjct 357358 AGAT-TCTTCGTGATAACATTCAAGGTATTACCAAGCCTGCTATCAGAAGATTGGCGAGA 357300 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| ||||| ||| |||| | ||| |||| ||||| | | | ||| | ||| Sbjct 357299 AGAGGTGGTGTCAAACGTATCTCAGCTTTGATCTACGAAGAAGTCAGAGGCGTTCTTAAG 357240 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 ||| | | ||||||| | ||||||| | ||||| || |||||||| | ||| Sbjct 357239 TCATTCTTAGAATCCGTTATTCGTGATGCTGTTACTTATACTGAACACGCTAAGAGAAAG 357180 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| || ||||| | |||||||| ||||| | ||||| Sbjct 357179 ACTGTCACTTCATTGGATGTTGTCTATGCTTTGAAGAGACAAGG 357136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075186285395