Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 224 1e-53 >seq2 Length=2234776 Score = 224 bits (248), Expect = 1e-53 Identities = 582/889 (65%), Gaps = 9/889 (1%) Strand=Plus/Minus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 |||||||||||| |||||| |||||||| ||||| || || || |||| || ||| | Sbjct 2161570 TTTTGATAATCAGAAACTCTCTTTTCGAAGAAATTAGTTTTACCAGCCAAAGAGATATTT 2161511 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 ||||| || ||||||||||| ||| || | | || || |||| | | | Sbjct 2161510 TCCATGAAGTCAAATGGATTGGAAGAGTTGTAAACCTTCTTGTTGCCCAAAGCAAGAAGT 2161451 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 ||||||||||| |||||||| | ||| |||||||| | | || |||||||| | || Sbjct 2161450 AATCTATCTGCAACAAATTCAACATACTGACACATGAGCTTGCAGTTCATACCTAATAAA 2161391 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATA 21424 ||||| | ||| | || || | ||||| || ||| |||||| ||| || Sbjct 2161390 GAGACAGGCAAAGCATCGGTGAAGTAGCCCTTTTCGATTTCGACAGCTTCAGTAATGATC 2161331 Query 21425 TTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAA 21484 ||| | || | ||| | || || || | ||| || ||||| Sbjct 2161330 TTTTCAACAATAACAGCGTCAGGTCTGTTGTTCAAATGAGAGAATAACAAGCAAGCAAAG 2161271 Query 21485 TCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATT 21544 ||| ||| ||||||||||| || | || ||||| ||||| ||||| | ||| |||||| Sbjct 2161270 TCAGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAGAATGTGAGACCAGGCATT 2161211 Query 21545 AATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCA 21604 || |||||||| || | ||| || || || ||||| | || || |||||||| || ||| Sbjct 2161210 AAACCTCTCTTCTTGAGCCAGAAGATAGAAGCAAACGAGCCCGAGAAGAAAATACCTTCA 2161151 Query 21605 ACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATC--CAAT-ATCCAT 21661 || |||||||| |||||||||| |||||| | || ||| ||| || | |||||| Sbjct 2161150 ACAGCAGCAAAGGCAACTAATCTTTCACCAAA---CAATGCTTCATCGTCATTGATCCAT 2161094 Query 21662 TTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGA 21721 | ||||||| ||||||| ||| || || ||| | |||||||| || || | | Sbjct 2161093 CGTAAAGCCCATTCAGCCTTTTGTTTGATGCATGGAATGTTTTCAATAGCATTGAATAAA 2161034 Query 21722 TGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAA 21781 | || | ||| | | || | || || ||||||| Sbjct 2161033 TAATCTGCTTCCTTTGTGTCCTTGATATAAGTATCAATCAGTAAGGAGTAAGTTTCAGAG 2160974 Query 21782 TGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACC 21841 || || ||||| ||| || || || || || || || | || || | | |||||| Sbjct 2160973 TGGATGTTTTCCATCATGATTTGGAAACCATAGAAGCACTTGGCTTCAGGAAGTTGAACT 2160914 Query 21842 TCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAAT 21901 || | | || || | || |||||||| || || |||||| || ||||| || Sbjct 2160913 TCAGCTGAGAAGTTTTCTACTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAAA 2160854 Query 21902 GCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAA---TTTTTTCCAATCTAAT 21958 || || | || |||||| ||| ||| || || | || |||| |||||| Sbjct 2160853 GCTAAGACTCTTGAAATAAAAAATCTTTCATTGTCATTCAAACGGTTTTCCCAATCATGA 2160794 Query 21959 AAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATAC 22018 | ||| ||| ||| || | ||||| | ||||| ||| ||| ||| || |||||| Sbjct 2160793 ACATCCTTTCCTAAGTCAATCTCTTCTGCAGTCCAGAAGGAAGCTTCAGCTTTCTTATAC 2160734 Query 22019 ATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTGTTAT 22067 || |||||| |||| |||| | ||||| || | ||||| || |||| Sbjct 2160733 ATTTGCCAGATTTCATGATATTTAATTGGGAAAAGAACAAATCTTTTAT 2160685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900700268600