Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 seq4 82.4 7e-11 >seq1 Length=2480924 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 ||||| || || |||||||| || | |||||| | ||||| || | |||||| || Sbjct 1632910 TTTGTTAAGACCTTAACTGGTAAGACTATTACCTTGGAAGTTGAATCTTCCGACACTATT 1632851 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || | |||||| |||||| ||||| ||||| || || || ||||||||| | || Sbjct 1632850 GACAATGTCAAAAGCAAGATTCAAGACAAGGAAGGAATTCCACCAGATCAACAGCGTTTG 1632791 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 || | | || |||||| | ||||| | |||| | || || ||||||||||| Sbjct 1632790 ATCTTTGCTGGTAAGCAATTAGAAGACGGAAGAACTTTGTCTGACTACAACATTCAAAAG 1632731 Query 24180 GAATCTACAATTCATTTAGTGTT 24202 || ||||| | ||||| || || Sbjct 1632730 GAGTCTACTCTCCATTTGGTCTT 1632708 >seq4 Length=1903616 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || || | ||||| |||| || ||| | Sbjct 1735484 ATGCAAATTTTCGTTAAGACCCTTACGGGTAAGACTATTACTCTCGAGGTTGAGTCTTCA 1735425 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| ||||||||||| || ||||| |||||| Sbjct 1735424 GACACCATTGACAATGTCAAGTCTAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 1735365 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | | || ||||| | ||||||| |||| | | || || ||| Sbjct 1735364 CAACGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGAAGAACCCTTTCTGACTACAAC 1735305 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 || ||||| ||||| || | ||||| || ||| Sbjct 1735304 ATCCAAAAGGAATCGACCCTCCATTTGGTCTTA 1735272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935921402325