Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4 102 8e-17 seq1 91.5 1e-13 >seq4 Length=1903616 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| | || ||||| | |||||| |||||||| |||||||| || Sbjct 1735258 CCACCACGGAGACGTAAGACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAA 1735317 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | || || | |||||| || || |||| ||||| || || || ||||| Sbjct 1735318 AGGGTTCTTCCATCTTCCAACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 1735377 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| || || ||||| | || | || || | ||||| | Sbjct 1735378 ATTCCTTCTTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCAACC 1735437 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| |||| || ||||| || || || || |||||||| ||||||| Sbjct 1735438 TCGAGAGTAATAGTCTTACCCGTAAGGGTCTTAACGAAAATTTGCATGA 1735486 >seq1 Length=2480924 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || ||||| | || |||||||||||||||||||| || | Sbjct 1632693 CCACCACGGAGACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 1632752 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||| |||| ||||| || || |||| |||||||| || || || || Sbjct 1632753 AAAGTTCTTCCGTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGA 1632812 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC--TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||||||| ||||| ||| | | ||| |||| | || | ||| |||| || || | Sbjct 1632813 ATTCCTTCCTTGTC-TTGAATCT-TGCTTTTGACATTGTCAATAGTGTCGGAAGATTCAA 1632870 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 || | ||||| || ||||| |||| || || || ||| Sbjct 1632871 CTTCCAAGGTAATAGTCTTACCAGTTAAGGTCTTAACAAAA 1632911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012711497600