Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 143 2e-29
seq4 91.5 1e-13
>seq1
Length=2480924
Score = 143 bits (158), Expect = 2e-29
Identities = 170/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| ||||| |||||| |||||||| | ||||| || || ||
Sbjct 1873493 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873552
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||| || || || ||| || || ||||| ||||| |||||||| || |
Sbjct 1873553 GACACTATTGA--CAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATC 1873610
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || | | || ||||| || || ||||||||||| | || ||| | || ||||
Sbjct 1873611 AGCAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACA 1873670
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||||| ||||| || ||||||| ||| || | |||||||| ||
Sbjct 1873671 ATATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873719
Score = 143 bits (158), Expect = 2e-29
Identities = 170/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| ||||| |||||| |||||||| | ||||| || || ||
Sbjct 1873721 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873780
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||| || || || ||| || || ||||| ||||| |||||||| || |
Sbjct 1873781 GACACTATTGA--CAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATC 1873838
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || | | || ||||| || || ||||||||||| | || ||| | || ||||
Sbjct 1873839 AGCAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACA 1873898
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||||| ||||| || ||||||| ||| || | |||||||| ||
Sbjct 1873899 ATATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873947
Score = 141 bits (156), Expect = 8e-29
Identities = 170/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| ||||| |||||| |||||||| | ||||| || || ||
Sbjct 1873265 ATGCAGATCTTTGTTAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873324
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||| || || || ||| || || ||||| ||||| |||||||| || |
Sbjct 1873325 GACACTATTGA--CAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATC 1873382
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || | | || ||||| || || ||||||||||| | || ||| | || ||||
Sbjct 1873383 AGCAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACA 1873442
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||||| ||||| || ||||||| ||| || | |||||||| ||
Sbjct 1873443 ATATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873491
Score = 138 bits (152), Expect = 1e-27
Identities = 169/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| ||||| |||||| |||||||| | ||||| || || ||
Sbjct 1873949 ATGCAAATTTTCGTGAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1874008
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||| || || || ||| || || ||||| ||||| |||||||| || |
Sbjct 1874009 GACACTATTGA--CAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATC 1874066
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || | | || ||||| || || ||||||||||| | || ||| | || ||||
Sbjct 1874067 AGCAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACA 1874126
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||||| ||||| || ||||||| ||| || | || ||||| ||
Sbjct 1874127 ATATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTTAGAGGTGG 1874175
Score = 105 bits (116), Expect = 6e-18
Identities = 148/204 (73%), Gaps = 8/204 (4%)
Strand=Plus/Minus
Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067
||||| ||||| || || ||||| | || || | ||||| || || || ||||||||
Sbjct 1632910 TTTGTTAAGACCTTAACTGGTAAGACTATTACCTTGGAAGTTGAATCTTCCGACACTATT 1632851
Query 25068 GAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCG 25123
|| || || |||||| | ||| ||||| ||||| |||||||| || ||||||||
Sbjct 1632850 GA--CAATGTCAAAAGCAAGAT-TCAA-GACAAGGAAGGAATTCCACCAGATCAACAGCG 1632795
Query 25124 GATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCA 25183
| || ||||| || || ||||||||||| | | ||| || || ||||| |||||
Sbjct 1632794 TTTGATCTTTGCTGGTAAGCAATTAGAAGACGGAAGAACTTTGTCTGACTACAACATTCA 1632735
Query 25184 AAAAGAATCCACGCTACATTTAGT 25207
||| || || || || ||||| ||
Sbjct 1632734 AAAGGAGTCTACTCTCCATTTGGT 1632711
>seq4
Length=1903616
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| | || ||||| | || || |||| || ||||| ||
Sbjct 1735484 ATGCAAATTTTCGTTAAGACCCTTACGGGTAAGACTATTACTCTCGAGGTTGAGTCTTCA 1735425
Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || || || ||| | || | ||| ||||||||||| ||||| || ||
Sbjct 1735424 GACACCATTGA--CAATGTCAAGTCTAAGATTCAA-GACAAAGAAGGAATTCCTCCAGAT 1735368
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
||||| || | || ||||| || || || || ||||||| | || | || |||
Sbjct 1735367 CAACAACGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGAAGAACCCTTTCTGACTAC 1735308
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207
|| || ||||| ||||| || || ||||| ||
Sbjct 1735307 AACATCCAAAAGGAATCGACCCTCCATTTGGT 1735276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327920782225
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |