Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 seq4 91.5 1e-13 >seq1 Length=2480924 Score = 143 bits (158), Expect = 2e-29 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| |||||| |||||||| | ||||| || || || Sbjct 1873493 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873552 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| || || ||||| ||||| |||||||| || | Sbjct 1873553 GACACTATTGA--CAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATC 1873610 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | | || ||||| || || ||||||||||| | || ||| | || |||| Sbjct 1873611 AGCAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACA 1873670 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||| ||||| || ||||||| ||| || | |||||||| || Sbjct 1873671 ATATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873719 Score = 143 bits (158), Expect = 2e-29 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| |||||| |||||||| | ||||| || || || Sbjct 1873721 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873780 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| || || ||||| ||||| |||||||| || | Sbjct 1873781 GACACTATTGA--CAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATC 1873838 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | | || ||||| || || ||||||||||| | || ||| | || |||| Sbjct 1873839 AGCAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACA 1873898 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||| ||||| || ||||||| ||| || | |||||||| || Sbjct 1873899 ATATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873947 Score = 141 bits (156), Expect = 8e-29 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| |||||| |||||||| | ||||| || || || Sbjct 1873265 ATGCAGATCTTTGTTAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873324 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| || || ||||| ||||| |||||||| || | Sbjct 1873325 GACACTATTGA--CAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATC 1873382 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | | || ||||| || || ||||||||||| | || ||| | || |||| Sbjct 1873383 AGCAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACA 1873442 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||| ||||| || ||||||| ||| || | |||||||| || Sbjct 1873443 ATATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873491 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| |||||| |||||||| | ||||| || || || Sbjct 1873949 ATGCAAATTTTCGTGAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1874008 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| || || ||||| ||||| |||||||| || | Sbjct 1874009 GACACTATTGA--CAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATC 1874066 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | | || ||||| || || ||||||||||| | || ||| | || |||| Sbjct 1874067 AGCAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACA 1874126 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||| ||||| || ||||||| ||| || | || ||||| || Sbjct 1874127 ATATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTTAGAGGTGG 1874175 Score = 105 bits (116), Expect = 6e-18 Identities = 148/204 (73%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 ||||| ||||| || || ||||| | || || | ||||| || || || |||||||| Sbjct 1632910 TTTGTTAAGACCTTAACTGGTAAGACTATTACCTTGGAAGTTGAATCTTCCGACACTATT 1632851 Query 25068 GAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCG 25123 || || || |||||| | ||| ||||| ||||| |||||||| || |||||||| Sbjct 1632850 GA--CAATGTCAAAAGCAAGAT-TCAA-GACAAGGAAGGAATTCCACCAGATCAACAGCG 1632795 Query 25124 GATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCA 25183 | || ||||| || || ||||||||||| | | ||| || || ||||| ||||| Sbjct 1632794 TTTGATCTTTGCTGGTAAGCAATTAGAAGACGGAAGAACTTTGTCTGACTACAACATTCA 1632735 Query 25184 AAAAGAATCCACGCTACATTTAGT 25207 ||| || || || || ||||| || Sbjct 1632734 AAAGGAGTCTACTCTCCATTTGGT 1632711 >seq4 Length=1903616 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || ||||| | || || |||| || ||||| || Sbjct 1735484 ATGCAAATTTTCGTTAAGACCCTTACGGGTAAGACTATTACTCTCGAGGTTGAGTCTTCA 1735425 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || ||| | || | ||| ||||||||||| ||||| || || Sbjct 1735424 GACACCATTGA--CAATGTCAAGTCTAAGATTCAA-GACAAAGAAGGAATTCCTCCAGAT 1735368 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | || ||||| || || || || ||||||| | || | || ||| Sbjct 1735367 CAACAACGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGAAGAACCCTTTCTGACTAC 1735308 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || ||||| ||||| || || ||||| || Sbjct 1735307 AACATCCAAAAGGAATCGACCCTCCATTTGGT 1735276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327920782225