Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 250 3e-61 >seq2 Length=2234776 Score = 250 bits (276), Expect = 3e-61 Identities = 607/912 (67%), Gaps = 7/912 (1%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||||||| ||||| || || |||| | ||||| |||||||| || || || | Sbjct 2161583 CATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCGAAGAAATTAGTTTTACCAGC 2161524 Query 92850 CAAAGATATCGAATTCACTA-GTGAT-TGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 |||||| || | || | || | |||||| | ||| ||| ||| | | Sbjct 2161523 CAAAGAGATATTTTCCATGAAGTCAAATGGATTGGAAGAGTTGTAAACCTTCTTGTTGCC 2161464 Query 92908 CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATT 92967 ||| | | ||||||||| || |||||||| | |||||| |||| | | || || Sbjct 2161463 CAAAGCAAGAAGTAATCTATCTGCAACAAATTCAACATACTGACACATGAGCTTGCAGTT 2161404 Query 92968 CATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGC 93027 ||| |||| | | ||||| | ||| ||||| ||| | | || |||||| | || || Sbjct 2161403 CATACCTAATAAAGAGACAGGCAAAGCATCGGTGAAGTAGCCCTTTTCGATTTCGACAGC 2161344 Query 93028 TTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTT-TTGTACGACATAATTGTACA 93086 ||| | | ||| | | || || | ||| | |||| | | || | | | | Sbjct 2161343 TTCAGTAATGATCTTTTCAACAATAACAGCGTCAGGTCTGTTGTTCAA-ATGAGAGAATA 2161285 Query 93087 TTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATG 93146 ||||| |||||||| |||||||||||||| |||| | ||||| || || ||||| Sbjct 2161284 ACAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAGAATG 2161225 Query 93147 TTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaa 93206 | | ||| || | | |||| ||||||||||| || || |||||||| || || | Sbjct 2161224 TGAGACCAGGCATTAAACCTCTCTTCTTGAGCCAGAAGATAGAAGCAAACGAGCCCGAGA 2161165 Query 93207 aaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTAC 93266 | || |||||||| || || ||||| || || | | ||| |||| ||| || Sbjct 2161164 AGAAAATACCTTCAACAGCAGCAAAGGCAACTAATCTTTCACCAAACAATGCTTCATCGT 2161105 Query 93267 TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326 |||||||| ||||||||| || || |||| || || || || | |||| |||| Sbjct 2161104 CATTGATCCATCGTAAAGCCCATTCAGCCTTTTGTTTGATGCATGGAATGTTTTCAATAG 2161045 Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386 | || |||| |||||| || | | || || || ||||| || | | || | Sbjct 2161044 CATTGAATAAATAATCTGCTTCCTTTGTGTCCTTGATATAAGTATCAATCAGTAAGGAGT 2160985 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446 | ||||||| |||| || ||||| |||||||| || ||||| || | ||||| | Sbjct 2160984 AAGTTTCAGAGTGGATGTTTTCCATCATGATTTGGAAACCATAGAAGCACTTGGCTTCAG 2160925 Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 | || ||||| || || | ||||| | ||||||||| || |||||||| |||| Sbjct 2160924 GAAGTTGAACTTCAGCTGAGAAGTTTTCTACTAAATTTTCATTAACAATACCATCAGATG 2160865 Query 93507 CTGCaaaaaaaGCCAATA--TATGCTTTATAAAATGTTTC-TCATCATCTTTAAGCTTAT 93563 | ||||| ||||| || | || || ||||| |||| | |||| | | || | Sbjct 2160864 CAGCAAAGAAAGCTAAGACTCTTGAAATAAAAAATCTTTCATTGTCATTCAAACGGTTTT 2160805 Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 ||||||| | ||| ||| | || | ||||| ||||||| || || ||||| | Sbjct 2160804 CCCAATCATGAACATCCTTTCCTAAGTCAATCTCTTCTGCAGTCCAGAAGGAAGCTTCAG 2160745 Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAG 93683 |||| || ||||| | ||| || || ||||||| |||||| || | ||||| | ||| Sbjct 2160744 CTTTCTTATACATTTGCCAGATTTCATGATATTTAATTGGGAAAAGAACAAATCTTTTAT 2160685 Query 93684 GGTTATCTTTTA 93695 ||| || |||| Sbjct 2160684 CGTTTTCCTTTA 2160673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860695588600