Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 176 8e-39 seq4 158 2e-33 >seq1 Length=2480924 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || | ||| || || ||||| |||| || || || ||||| || || || || || Sbjct 1874175 CCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1874116 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || |||||||| ||||| || || || ||||||||||| || || |||||| Sbjct 1874115 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1874056 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||| |||||| || || ||||||| |||||| ||| Sbjct 1874055 ATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACT 1873996 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||||||||| || || | |||||| ||||| || ||||| Sbjct 1873995 TCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || || || ||||| |||| || || || ||||| || || || || || || || | Sbjct 1873482 AGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGT 1873423 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || |||||||| ||||| || || || ||||||||||| || || |||||||| |||||| Sbjct 1873422 CCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCC 1873363 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||||||||| |||||| || || ||||||| |||||| ||||| || ||| Sbjct 1873362 TTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTG 1873303 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || | |||||| || || |||||||| Sbjct 1873302 ATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCAT 1873265 Score = 170 bits (188), Expect = 4e-37 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || || || ||||| |||| || || || ||||| || || || || || || || | Sbjct 1873710 AGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGT 1873651 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || |||||||| ||||| || || || ||||||||||| || || |||||||| |||||| Sbjct 1873650 CCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCC 1873591 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||||||||| |||||| || || ||||||| |||||| ||||| || ||| Sbjct 1873590 TTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTG 1873531 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || | ||||| ||||| || ||||| Sbjct 1873530 ATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493 Score = 170 bits (188), Expect = 4e-37 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || || || ||||| |||| || || || ||||| || || || || || || || | Sbjct 1873938 AGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGT 1873879 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || |||||||| ||||| || || || ||||||||||| || || |||||||| |||||| Sbjct 1873878 CCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCC 1873819 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||||||||| |||||| || || ||||||| |||||| ||||| || ||| Sbjct 1873818 TTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTG 1873759 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || | ||||| ||||| || ||||| Sbjct 1873758 ATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| ||||| || || || ||||| ||||| ||||| || || || Sbjct 1632693 CCACCACGGAGACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 1632752 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || || || |||||||| ||||| || || || || | | ||||| || |||||| Sbjct 1632753 AAAGTTCTTCCGTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGA 1632812 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||| ||||| || || ||||| | ||||| ||| Sbjct 1632813 ATTCCTTCCTTGTCTTGAATCTTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCAACT 1632872 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| || || || || || | |||||| || || Sbjct 1632873 TCCAAGGTAATAGTCTTACCAGTTAAGGTCTTAACAAA 1632910 >seq4 Length=1903616 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || || ||||| || || || || || ||||||||||| || || || Sbjct 1735258 CCACCACGGAGACGTAAGACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAA 1735317 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| |||||||| || || || || | | |||||| || || ||| Sbjct 1735318 AGGGTTCTTCCATCTTCCAACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 1735377 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||||||||| | |||||| || |||||||||| || || || Sbjct 1735378 ATTCCTTCTTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCAACC 1735437 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | || || || || ||||| |||||||| ||||| || ||||| || Sbjct 1735438 TCGAGAGTAATAGTCTTACCCGTAAGGGTCTTAACGAAAATTTGCATGAT 1735487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622227195800