Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1 102 6e-17 >seq1 Length=2480924 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||| ||||| || ||| |||| || || || || |||||||| || | ||| ||| | Sbjct 1873261 CAACATGCAGATCTTTGTTAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATC 1873320 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 |||| || | | | || | ||| || ||| || || || ||| | || | | Sbjct 1873321 ATCAGACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGA 1873380 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| ||||||||||| || ||| ||||||| | |||| | | || || Sbjct 1873381 TCAGCAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTA 1873440 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||| |||||||| || | ||| |||| |||||| || |||| || Sbjct 1873441 CAATATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873491 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || || || || |||||||| || | ||| ||| | || Sbjct 1873493 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873552 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| || || || ||| | || | | || Sbjct 1873553 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873612 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| ||||||||||| || ||| ||||||| | |||| | | || |||||| Sbjct 1873613 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873672 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||| || | ||| |||| |||||| || |||| || Sbjct 1873673 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873719 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || || || || |||||||| || | ||| ||| | || Sbjct 1873721 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873780 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| || || || ||| | || | | || Sbjct 1873781 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873840 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| ||||||||||| || ||| ||||||| | |||| | | || |||||| Sbjct 1873841 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873900 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||| || | ||| |||| |||||| || |||| || Sbjct 1873901 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873947 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || || || || |||||||| || | ||| ||| | || Sbjct 1873949 ATGCAAATTTTCGTGAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1874008 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| || || || ||| | || | | || Sbjct 1874009 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1874068 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| ||||||||||| || ||| ||||||| | |||| | | || |||||| Sbjct 1874069 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1874128 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||| || | ||| |||| |||||| | |||| || Sbjct 1874129 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTTAGAGGTGG 1874175 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 21843 TTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCAGAAACGGTG 21902 ||| |||| || ||||| || || || |||||| ||||| ||| | | || || | Sbjct 1632910 TTTGTTAAGACCTTAACTGGTAAGACTATTACCTTGGAAGTTGAATCTTCCGACACTATT 1632851 Query 21903 GCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTT 21962 | | || | || || ||| || || || || | || | | |||||| | | Sbjct 1632850 GACAATGTCAAAAGCAAGATTCAAGACAAGGAAGGAATTCCACCAGATCAACAGCGTTTG 1632791 Query 21963 ATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAG 22022 ||||||||||| || ||| ||||||| || |||| || | || ||||| ||||| ||| Sbjct 1632790 ATCTTTGCTGGTAAGCAATTAGAAGACGGAAGAACTTTGTCTGACTACAACATTCAAAAG 1632731 Query 22023 GAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| ||| |||| || ||| | || || || Sbjct 1632730 GAGTCTACTCTCCATTTGGTCTTGCGTCTCCGTGGTGG 1632693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358124734530310