Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 120 6e-22 >seq2 Length=2234776 Score = 120 bits (132), Expect = 6e-22 Identities = 181/255 (71%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 42612 TTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGG 42671 ||||| || || || | || || |||||||| | ||||| || ||||| | ||| Sbjct 2161038 TTCAATGCTATTGAAAACATTCCATGCATCAAACAAAAGGCTGAATGGGCTTTACGATGG 2161097 Query 42672 ATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGC 42731 ||| | || ||| ||| || || || | || |||||| | || || || || Sbjct 2161098 ATCAATGACGATGAAGCATTGTTTGGTGAAAGATTAGTTGCCTTTGCTGCTGTTGAAGGT 2161157 Query 42732 ATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCC 42790 || |||||||||||| | || || || ||||||||||||||| ||| |||| | ||||| Sbjct 2161158 ATTTTCTTCTCGGGCTCGTTTGCTTCTATCTTCTGGCTCAAGAAGAGAGGT-TTAATGCC 2161216 Query 42791 CGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGC 42850 || ||||| ||||| |||||| | ||| |||| || || || | |||| |||||||| Sbjct 2161217 TGGTCTCACATTCTCTAACGAATTGATCTGCAGAGATGAAGGTTTACATACTGACTTTGC 2161276 Query 42851 CTGCCTCCTGTTCTC 42865 ||| | | ||||| Sbjct 2161277 TTGCTTGTTATTCTC 2161291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339022936400