Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4 100 7e-16 seq1 100 7e-16 >seq4 Length=1903616 Score = 100 bits (110), Expect = 7e-16 Identities = 165/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||| ||||| | |||| || | ||| | || ||| |||||||| || ||||| | Sbjct 1735258 CCACCACGGAGACGTAAG-ACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGA 1735316 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| ||||| || || || || || ||||||| ||| |||||| ||||| Sbjct 1735317 AAGGGTTCTTCCATCTTCCAACTGCTTACCAGCAAAGATCAAACGTTGTTGA---TCTGG 1735373 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||||||||| || || || || | || || || || || | || || || Sbjct 1735374 AGGAATTCCTTCTTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTC 1735433 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || ||||| || || ||||| || || || ||||| ||||| || ||||| || Sbjct 1735434 AACCTCGAGAGTAATAGTCTTACCCGTAAGGGTCTTAACGAAAATTTGCATGAT 1735487 >seq1 Length=2480924 Score = 100 bits (110), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| ||||| | || || ||||||||||||||||| ||||| || || Sbjct 1873684 TTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAA 1873625 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | || ||| ||| || ||||| || || || || || || || || Sbjct 1873624 GATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATT 1873565 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || ||||| ||||| | ||||| || || || |||| ||||| || Sbjct 1873564 GTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCAC 1873505 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 1873504 GAAAATTTGCAT 1873493 Score = 100 bits (110), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| ||||| | || || ||||||||||||||||| ||||| || || Sbjct 1873912 TTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAA 1873853 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | || ||| ||| || ||||| || || || || || || || || Sbjct 1873852 GATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATT 1873793 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || ||||| ||||| | ||||| || || || |||| ||||| || Sbjct 1873792 GTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCAC 1873733 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 1873732 GAAAATTTGCAT 1873721 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| ||||| | || || ||||||||||||||||| ||||| || || Sbjct 1873456 TTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAA 1873397 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | || ||| ||| || ||||| || || || || || || || || Sbjct 1873396 GATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATT 1873337 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || ||||| ||||| | ||||| || || || |||| ||||| || Sbjct 1873336 GTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTAAC 1873277 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 1873276 AAAGATCTGCAT 1873265 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| ||||| | || || ||||||||||||||||| ||||| || || Sbjct 1874140 TTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAA 1874081 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | || ||| ||| || ||||| || || || || || || || || Sbjct 1874080 GATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATT 1874021 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || ||||| ||||| | ||||| || || || |||| ||||| || Sbjct 1874020 GTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTCAC 1873961 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 1873960 GAAAATTTGCAT 1873949 Score = 95.1 bits (104), Expect = 3e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||| | | || | ||||||||||||||| || || || ||| Sbjct 1632729 TCCTTTTGAATGTTGTAGTCAGACAAAGTTCTTCCGTCTTCTAATTGCTTACCAGCAAAG 1632788 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| |||||||||| ||| |||||||| || || || || || ||| || || Sbjct 1632789 ATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGAATCTTGCTTTTGACATTG 1632848 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| ||||| ||||| | || || ||||| || || | ||||| || Sbjct 1632849 TCAATAGTGTCGGAAGATTCAACTTCCAAGGTAATAGTCTTACCAGTTAAGGTCTTAACA 1632908 Query 288463 AA 288464 || Sbjct 1632909 AA 1632910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654173285170