Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq1 127 2e-24
>seq1
Length=2480924
Score = 127 bits (140), Expect = 2e-24
Identities = 169/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||||| ||| ||||||||||| ||||| ||||||||||||||||| || |
Sbjct 1873492 ACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGA 1873433
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || |||| |||| ||||| ||||| || ||||||| ||||| || | |||
Sbjct 1873432 TAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGG 1873373
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159
| | ||||||| | ||| | || | |||| | | | ||||| ||||| |
Sbjct 1873372 AATACCTTCCTTGT-CTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAA 1873314
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
| || | ||||||||||| || || | ||||| |||||||| ||||| ||
Sbjct 1873313 CTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCATGTT 1873262
Score = 125 bits (138), Expect = 8e-24
Identities = 174/241 (72%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 41969 ATTAATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAAT 42028
||| ||||| | ||| ||||| | ||| ||||||||||| ||||| |||||||||||
Sbjct 1874188 ATTCATTTAGCAACCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAAT 1874129
Query 42029 ATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTG 42088
|||||| || | ||||| || |||| |||| ||||| ||||| || ||||||| ||
Sbjct 1874128 ATTGTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTG 1874069
Query 42089 CTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGT 42147
||| || | ||| | | ||||||| | ||| | || | |||| | | | ||||
Sbjct 1874068 CTGATCTGGTGGAATACCTTCCTTGT-CTTGAATCTTACTCTTGACATTGTCAATAGTGT 1874010
Query 42148 CGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207
| ||||| || || | ||||||||||| || || | ||||| || || |||||||
Sbjct 1874009 CTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCA 1873950
Query 42208 T 42208
|
Sbjct 1873949 T 1873949
Score = 122 bits (134), Expect = 9e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||||| ||| ||||||||||| ||||| ||||||||||||||||| || |
Sbjct 1873720 ACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGA 1873661
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || |||| |||| ||||| ||||| || ||||||| ||||| || | |||
Sbjct 1873660 TAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGG 1873601
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159
| | ||||||| | ||| | || | |||| | | | ||||| ||||| |
Sbjct 1873600 AATACCTTCCTTGT-CTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAA 1873542
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || | ||||||||||| || || | ||||| || || ||||||||
Sbjct 1873541 CTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493
Score = 122 bits (134), Expect = 9e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||||| ||| ||||||||||| ||||| ||||||||||||||||| || |
Sbjct 1873948 ACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGA 1873889
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || |||| |||| ||||| ||||| || ||||||| ||||| || | |||
Sbjct 1873888 TAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGG 1873829
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159
| | ||||||| | ||| | || | |||| | | | ||||| ||||| |
Sbjct 1873828 AATACCTTCCTTGT-CTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAA 1873770
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || | ||||||||||| || || | ||||| || || ||||||||
Sbjct 1873769 CTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721
Score = 86.0 bits (94), Expect = 7e-12
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
|||||| |||||||| | || |||||||||||| ||||| |||| || ||| | |
Sbjct 1632704 ACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTTCC 1632763
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| |||| ||||||||||| || || | ||||| || || | ||| | | |||||
Sbjct 1632764 GTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTT 1632823
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
||| || || ||||| | | | |||||| ||||| || || | || ||
Sbjct 1632824 GTCTTGAATCTTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCAACTTCCAAGGTAAT 1632883
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAA 42199
|| || || |||| ||||| |||||
Sbjct 1632884 AGTCTTACCAGTTAAGGTCTTAACAAA 1632910
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212698147600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |