Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq1 96.9 3e-15
seq4 89.7 5e-13
>seq1
Length=2480924
Score = 96.9 bits (106), Expect = 3e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293
||| | ||| | || ||||| |||||||| ||||| || | | || || |||||||
Sbjct 1873702 CACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTC 1873643
Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353
| ||||| || ||| | ||||| | ||||| || || ||||| ||||| || |||||
Sbjct 1873642 TAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTG 1873583
Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
|| || ||| ||| || | || || | || ||||||| || | ||| ||
Sbjct 1873582 AATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTT 1873523
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| ||||| || || ||||||||||||||
Sbjct 1873522 ACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493
Score = 96.9 bits (106), Expect = 3e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293
||| | ||| | || ||||| |||||||| ||||| || | | || || |||||||
Sbjct 1873930 CACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTC 1873871
Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353
| ||||| || ||| | ||||| | ||||| || || ||||| ||||| || |||||
Sbjct 1873870 TAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTG 1873811
Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
|| || ||| ||| || | || || | || ||||||| || | ||| ||
Sbjct 1873810 AATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTT 1873751
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| ||||| || || ||||||||||||||
Sbjct 1873750 ACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293
||| | ||| | || ||||| |||||||| ||||| || | | || || |||||||
Sbjct 1874158 CACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTC 1874099
Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353
| ||||| || ||| | ||||| | ||||| || || ||||| ||||| || |||||
Sbjct 1874098 TAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTG 1874039
Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
|| || ||| ||| || | || || | || ||||||| || | ||| ||
Sbjct 1874038 AATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTT 1873979
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| ||||| || || ||||||||||||||
Sbjct 1873978 ACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949
>seq4
Length=1903616
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|||||||| ||||| |||||||| || | | ||| | | ||||| | |||||| ||
Sbjct 1735288 GTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCATCTTCCAACTGCTTACCA 1735347
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || | || || || || ||||||||||||||||| ||||| || || |||
Sbjct 1735348 GCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTAGACTTG 1735407
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| || | || || | || || || | ||| | ||||| || || | ||
Sbjct 1735408 ACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATAGTCTTACCCGTAAGGGTC 1735467
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||||||||||||
Sbjct 1735468 TTAACGAAAATTTGCAT 1735484
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499644706316600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |