Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq4 89.7 5e-13 >seq1 Length=2480924 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | || ||||| |||||||| ||||| || | | || || ||||||| Sbjct 1873702 CACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTC 1873643 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | ||||| || ||| | ||||| | ||||| || || ||||| ||||| || ||||| Sbjct 1873642 TAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTG 1873583 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| ||| || | || || | || ||||||| || | ||| || Sbjct 1873582 AATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTT 1873523 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| || || |||||||||||||| Sbjct 1873522 ACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | || ||||| |||||||| ||||| || | | || || ||||||| Sbjct 1873930 CACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTC 1873871 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | ||||| || ||| | ||||| | ||||| || || ||||| ||||| || ||||| Sbjct 1873870 TAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTG 1873811 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| ||| || | || || | || ||||||| || | ||| || Sbjct 1873810 AATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTT 1873751 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| || || |||||||||||||| Sbjct 1873750 ACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | || ||||| |||||||| ||||| || | | || || ||||||| Sbjct 1874158 CACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTC 1874099 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | ||||| || ||| | ||||| | ||||| || || ||||| ||||| || ||||| Sbjct 1874098 TAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTG 1874039 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| ||| || | || || | || ||||||| || | ||| || Sbjct 1874038 AATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTT 1873979 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| || || |||||||||||||| Sbjct 1873978 ACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949 >seq4 Length=1903616 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 |||||||| ||||| |||||||| || | | ||| | | ||||| | |||||| || Sbjct 1735288 GTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCATCTTCCAACTGCTTACCA 1735347 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || || || || ||||||||||||||||| ||||| || || ||| Sbjct 1735348 GCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTAGACTTG 1735407 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | || || || | ||| | ||||| || || | || Sbjct 1735408 ACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATAGTCTTACCCGTAAGGGTC 1735467 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||||||||| Sbjct 1735468 TTAACGAAAATTTGCAT 1735484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644706316600