Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq4 125 6e-24
seq1 86.0 6e-12
>seq4
Length=1903616
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | || || | ||| || || |||||||||||||| || || ||
Sbjct 1735258 CCACCACGGAGACGTAAGACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAA 1735317
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| |||| | ||| ||||| || || || || | ||||| ||||| || || || |||
Sbjct 1735318 AGGGTTCTTCCATCTTCCAACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 1735377
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| |||||||| |||||||| || |||| || | |||||| |||||||| ||
Sbjct 1735378 ATTCCTTCTTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCAACC 1735437
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||||||| || || || || || || || || |||||||||||
Sbjct 1735438 TCGAGAGTAATAGTCTTACCCGTAAGGGTCTTAACGAAAATTTGCAT 1735484
>seq1
Length=2480924
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | ||| || | ||| || || || |||||||| || || || ||
Sbjct 1632690 ATACCACCACGGAGACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCA 1632749
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | || || ||||| || || || | ||||| || || || || ||
Sbjct 1632750 GACAAAGTTCTTCCGTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGT 1632809
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| ||||| || |||||||| || ||||| || | ||||||||||| ||
Sbjct 1632810 GGAATTCCTTCCTTGTCTTGAATCTTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCA 1632869
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAA 45332
||||| | |||| || || || |||| || || ||||||
Sbjct 1632870 ACTTCCAAGGTAATAGTCTTACCAGTTAAGGTCTTAACAAAA 1632911
Score = 82.4 bits (90), Expect = 7e-11
Identities = 145/212 (68%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188
||||| | ||| | |||||||||||||| ||||| || || | ||| ||
Sbjct 1873704 AACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCT 1873645
Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248
|| ||||| ||||| || | || | || |||||| || || ||||| ||||| || |||
Sbjct 1873644 TCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCT 1873585
Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308
||||| || |||| || | ||||| || || || ||||| | || | |||
Sbjct 1873584 TGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTT 1873525
Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || | || || || |||||||||||
Sbjct 1873524 TTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493
Score = 82.4 bits (90), Expect = 7e-11
Identities = 145/212 (68%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188
||||| | ||| | |||||||||||||| ||||| || || | ||| ||
Sbjct 1873932 AACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCT 1873873
Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248
|| ||||| ||||| || | || | || |||||| || || ||||| ||||| || |||
Sbjct 1873872 TCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCT 1873813
Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308
||||| || |||| || | ||||| || || || ||||| | || | |||
Sbjct 1873812 TGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTT 1873753
Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || | || || || |||||||||||
Sbjct 1873752 TTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452003115249400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |