Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq4 136 9e-27
seq1 125 2e-23
seq5 100 7e-16
>seq4
Length=1903616
Score = 136 bits (150), Expect = 9e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486
||||| ||||| |||||||||| ||||||||||| | || ||||||||||||| ||||
Sbjct 1735282 TGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCATCTTCCAACTGC 1735341
Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546
|| || || ||||| | ||| || || || ||| |||||||||| || ||||||||
Sbjct 1735342 TTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTA 1735401
Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606
||| || || | |||||||| | || || || | || || |||||||||||
Sbjct 1735402 GACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATAGTCTTACCCGTA 1735461
Query 199607 AGAGTTTTCACAAAAATTTG 199626
|| || || || ||||||||
Sbjct 1735462 AGGGTCTTAACGAAAATTTG 1735481
>seq1
Length=2480924
Score = 125 bits (138), Expect = 2e-23
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | || ||| | |||||||| ||||||||||| | ||||||||||| ||||||
Sbjct 1632699 CGGAGACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTT 1632758
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
||||| ||||| | ||||| || || ||||| | |||||| || || || |||||||
Sbjct 1632759 CTTCCGTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCT 1632818
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || |||||||| || || || | ||||| | | ||| || |||||
Sbjct 1632819 TCCTTGTCTTGAATCTTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCAACTTCCAAG 1632878
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAG 199637
|| || |||||||| || | || || |||||| | | ||| || ||||
Sbjct 1632879 GTAATAGTCTTACCAGTTAAGGTCTTAACAAAACTATAGTATATGTTAG 1632927
>seq5
Length=1485630
Score = 100 bits (110), Expect = 7e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827
|||||||| || | ||||| || | |||| || | |||||| ||||||| || |
Sbjct 766598 GCGTCCTTATAAAGCATGAATGGGACACCAGTTTCAGTTTGAGCTTCCAAAATAGAGTAC 766539
Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887
||||||| ||| ||||| || || || ||||||||||| ||| ||||| |||||
Sbjct 766538 CAAAGTTTTTGAGCTTTCACTGTTCTTACAGCTCTTCCTTCACGTTCATATCTTTCATAC 766479
Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 167947
| |||| || || || |||||| || | ||| |||||||| || || |||||
Sbjct 766478 AAAGCTTCAAATTCTTTACCGTAACAATCAGATAAACCTGGAGCTTCATTAGGTGAAAAG 766419
Query 167948 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAA 167985
| | ||||| || | | ||| || |||||||| ||
Sbjct 766418 AAAGACCAATCACCGCCAGCCTCAACTCTCTTCATAAA 766381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178921373426005
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |