Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4 136 9e-27 seq1 125 2e-23 seq5 100 7e-16 >seq4 Length=1903616 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| ||||| |||||||||| ||||||||||| | || ||||||||||||| |||| Sbjct 1735282 TGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCATCTTCCAACTGC 1735341 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||| | ||| || || || ||| |||||||||| || |||||||| Sbjct 1735342 TTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTA 1735401 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || || | |||||||| | || || || | || || ||||||||||| Sbjct 1735402 GACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATAGTCTTACCCGTA 1735461 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || || || |||||||| Sbjct 1735462 AGGGTCTTAACGAAAATTTG 1735481 >seq1 Length=2480924 Score = 125 bits (138), Expect = 2e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | |||||||| ||||||||||| | ||||||||||| |||||| Sbjct 1632699 CGGAGACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTT 1632758 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||| ||||| | ||||| || || ||||| | |||||| || || || ||||||| Sbjct 1632759 CTTCCGTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCT 1632818 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| || || || | ||||| | | ||| || ||||| Sbjct 1632819 TCCTTGTCTTGAATCTTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCAACTTCCAAG 1632878 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAG 199637 || || |||||||| || | || || |||||| | | ||| || |||| Sbjct 1632879 GTAATAGTCTTACCAGTTAAGGTCTTAACAAAACTATAGTATATGTTAG 1632927 >seq5 Length=1485630 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827 |||||||| || | ||||| || | |||| || | |||||| ||||||| || | Sbjct 766598 GCGTCCTTATAAAGCATGAATGGGACACCAGTTTCAGTTTGAGCTTCCAAAATAGAGTAC 766539 Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887 ||||||| ||| ||||| || || || ||||||||||| ||| ||||| ||||| Sbjct 766538 CAAAGTTTTTGAGCTTTCACTGTTCTTACAGCTCTTCCTTCACGTTCATATCTTTCATAC 766479 Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 167947 | |||| || || || |||||| || | ||| |||||||| || || ||||| Sbjct 766478 AAAGCTTCAAATTCTTTACCGTAACAATCAGATAAACCTGGAGCTTCATTAGGTGAAAAG 766419 Query 167948 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAA 167985 | | ||||| || | | ||| || |||||||| || Sbjct 766418 AAAGACCAATCACCGCCAGCCTCAACTCTCTTCATAAA 766381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921373426005