Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 seq4 93.3 4e-14 >seq2 Length=2234776 Score = 95.1 bits (104), Expect = 1e-14 Identities = 180/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 132876 CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAG 132935 |||||| ||| | ||||||||||||||| ||| || || || || ||| | || | Sbjct 2161298 CAAATGAGAGAATAACAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAGATCAA 2161239 Query 132936 TTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGC 132995 |||||| ||| || | || ||||| | || | || |||||||| || || | || Sbjct 2161238 TTCGTTAGAGAATGTGAGACCAGGCATTAAACCTCTCTTCTTGAGCCAGAAGATAGAAGC 2161179 Query 132996 GAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA 133055 || |||||| ||||| | || || || || || || || || | | || || || Sbjct 2161178 AAACGAGCCCGAGAAGAAAATACCTTCAACAGCAGCAAAGGCAACTAATCTTTCACCAAA 2161119 Query 133056 CGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 | ||||| | | |||||| || | |||||||| ||||||| ||||| ||| || Sbjct 2161118 CAATGCTTCATCGTCATTGATCCATCGTAAAGCCCATTCAGCCTTTTGTTTGATGCATGG 2161059 Query 133116 CATCGTTTCGATGGCGTTCAACAAA 133140 || |||| || || || || ||| Sbjct 2161058 AATGTTTTCAATAGCATTGAATAAA 2161034 >seq4 Length=1903616 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || ||||| || || || || |||| || ||| | | Sbjct 1735484 ATGCAAATTTTCGTTAAGACCCTTACGGGTAAGACTATTACTCTCGAGGTTGAGTCTTCA 1735425 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || || | |||||||| |||||||| | || ||| Sbjct 1735424 GACACCATTGACAATGTCAAGTCTAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 1735365 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || ||| |||| || | | ||||| ||||||||| Sbjct 1735364 CAACGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGAAGAACCCTTTCTGACTACAAC 1735305 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||||||||| |||| || |||||||| Sbjct 1735304 ATCCAAAAGGAATCGACCCTCCATTTGGT 1735276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172706217600