Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2 147 3e-30 >seq2 Length=2234776 Score = 147 bits (162), Expect = 3e-30 Identities = 198/273 (73%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 153746 TGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCA 153805 ||||||||| |||| | || || |||||| |||| ||||| ||||| ||||| || Sbjct 1089934 TGATATTGCCTTAGGATCTGCTCAGAGATTTGGTGTTCCAATGGGTTATGGTGGTCCACA 1089993 Query 153806 TGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGA---ATTGT 153862 |||||| |||||||| || | |||| || | || || ||||| ||| |||| Sbjct 1089994 TGCTGCTTTCTTTGCTGTAAGCAATAAGTTCAATCGTAAAATGCCTGGTAGACTAATTGG 1090053 Query 153863 AGGTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGA 153922 ||||||| | |||||| |||| || || | ||||| || |||||||| | || Sbjct 1090054 -GGTCAGTAA--AGATAGATTAGGTGATCCTGCTTTAAGATTGGCTTTACAGACTCGTGA 1090110 Query 153923 GCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGC 153982 ||||||||||| |||||| ||||| |||||||| || || || ||||| || | || || Sbjct 1090111 GCAGCATATCAAGAGAGAAAAAGCTACCAGTAATATTTGTACTGCTCAAGCTTTACTTGC 1090170 Query 153983 TAATATGTCTGGATTCTATGCAGCATATCATGG 154015 |||||| | || ||||| | ||||||||| Sbjct 1090171 CAATATGGCCGGTGCTTATGCTGTATATCATGG 1090203 Score = 141 bits (156), Expect = 1e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 153206 TATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTGA 153265 ||| ||| |||| ||| ||| |||| |||||| |||| || | ||||| ||||||| Sbjct 1089379 TATTGGTAAAGGTTACASTGGTACCAATACACCTGCAGTTATCCTTAGAAACATTCTTGA 1089438 Query 153266 GAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATT 153325 |||| ||||||||||| || || || ||||| | || || ||||| || ||| | Sbjct 1089439 ATGTCCTGAATGGTACACATCATATACACCTTATCAGCCAGAAATTTCTCAAGGTAGACT 1089498 Query 153326 GGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAA 153385 || ||| |||| || || ||||| | | | || | || ||||||||||| || || Sbjct 1089499 TGAGGCTCTATTGAACTATCAAACTGTTGTTTCTGATTTGACTGGATTACCAATTGCTAA 1089558 Query 153386 CGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || ||| || |||| |||| |||||||||||||||||||||| Sbjct 1089559 TGCGTCTTTACTAGACGAAGGAACTGCAGCAGCAGAAGCAATG 1089601 Score = 136 bits (150), Expect = 5e-27 Identities = 273/398 (69%), Gaps = 14/398 (4%) Strand=Plus/Plus Query 154708 AAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCA 154767 ||||||| | || |||| || | ||||| |||||||| || || || ||| | | Sbjct 1090917 AAAGAAACATTTGCCTGATCCCCGTTTCAGCCCATGGAACCAACCCAGCATCTGCAGCAA 1090976 Query 154768 TGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAG 154827 |||| || |||||||| |||| || || ||| |||| ||||| | || | ||| Sbjct 1090977 TGGCTGGCATGAAAGTAGTAGCAGTTAAATGTCTTGATAATGGTTCATTGGATCTTGAAG 1091036 Query 154828 ATCTAGAGAAGAAAGC----AA--TCATGAATACATTTGAACTGTCATGTATTATGATTA 154881 |||| | ||||| || ||| || ||| ||| ||| | ||||||| | Sbjct 1091037 ATCTTGCTGCTAAAGCTGAAAAGTTCAGTAA-ACAGTTGG-CTGC----TGTTATGATCA 1091090 Query 154882 CATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACA-GATATGTAAGATCGTT 154940 | || || ||||| ||||| | |||||| || || | | | | ||| | | || ||| Sbjct 1091091 CTTATCCTTCTACTTATGGTCTGTTTGAACCTGGTATCAAAGATGCTAT-TGATATTGTT 1091149 Query 154941 CATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTA 155000 ||| | ||||||| || || ||||||||||| || ||| | ||||| || || || || Sbjct 1091150 CATAGCCATGGTGGCCAAGTCTATCTTGATGGTGCTAATATGAATGCTCAAGTTGGCTTA 1091209 Query 155001 GCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGT 155060 | || |||| || || ||||| |||||| | ||||| || || ||||||||| Sbjct 1091210 ACCTCGCCTGGTGATCTAGGGGCTGATGTTTGTCATTTGAACTTGCACAAGACATTCTGT 1091269 Query 155061 ATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTAT 155098 ||||| || || ||||| ||||| || || ||||| || Sbjct 1091270 ATTCCTCACGGCGGTGGTGGTCCCGGTGTTGGTCCAAT 1091307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212691397600