Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2 170 2e-37 >seq2 Length=2234776 Score = 170 bits (188), Expect = 2e-37 Identities = 491/743 (66%), Gaps = 28/743 (4%) Strand=Plus/Plus Query 159046 TATCATAGTGAGACTGACATGATGAGATATATCTATGAGTTAGCATCAAAAGATTTCTCA 159105 ||||||| || |||| |||| |||||||| | ||||| | ||| || ||||| || Sbjct 1090580 TATCATAACGAAACTGCCATGTTGAGATATTTACATGAGCTTCAATCTAAGGATTTATCT 1090639 Query 159106 TTAGTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGAA 159165 | | ||| | ||| |||| |||||| ||||||||||||||||| ||| | |||| Sbjct 1090640 CTTGCTAATAGCATGATTCCTCTTGGTTCATGTACTATGAAACTAAATGCAACGGTAGAA 1090699 Query 159166 CTGATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATACAG 159225 |||| || | | ||| || || ||| | |||||| | |||| || Sbjct 1090700 ATGATTCCGATCACTTGGCCTGAATTCAGCAACATTCATCCATTTGTTCCTAA-----AG 1090754 Query 159226 ACCATG-----GGTTATCAAAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCA 159280 |||| | ||||| || | || | ||| | | ||| || |||||||| Sbjct 1090755 ACCAAGCTGAAGGTTACTTGGAATTGATCGCTGAACTGGAAAAAGATCTAGCTGATATCA 1090814 Query 159281 CAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGAC 159340 | || |||||||| | || | || || | || | || ||||| || | || Sbjct 1090815 CTGGTTTTGATTCAACCTCGCTGATGCCGAATTCTGGTGCTCAAGGTGAATACACCGGTT 1090874 Query 159341 TGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATA-AAAGAAATGTATGTTTG 159399 | | | ||| || || | | | | ||| | | | ||||||| | || || Sbjct 1090875 TAAGAACCATCAGGGCTTATT-TGGATGCTAAGGGGGAAACAGAAAGAAACATTTGCCTG 1090933 Query 159400 ATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTT 159459 || || | ||||| |||||||| || || ||||| |||| ||||| || |||||||| Sbjct 1090934 ATCCCCGTTTCAGCCCATGGAACCAACCCAGCATCTGCAGCAATGGCTGGCATGAAAGTA 1090993 Query 159460 GTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGC- 159518 |||| || || ||| |||| |||| | || | ||||||| | ||||| Sbjct 1090994 GTAGCAGTTAAATGTCTTGATAATGGTTCATTGGATCTTGAAGATCTTGCTGCTAAAGCT 1091053 Query 159519 ---AA--TCATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACAT 159573 || ||| || ||| ||| ||| | ||||||| || ||||| ||||| || Sbjct 1091054 GAAAAGTTCAGTAA-ACAGTTGG-CTGC----TGTTATGATCACTTATCCTTCTACTTAT 1091107 Query 159574 GGTGTATTTGAAACAAACATCAGACA-GATATGTAAGATTGTTCATGAGAATGGTGGTCA 159632 ||| | |||||| | |||| | | | ||| | | ||||||||| ||||||| || Sbjct 1091108 GGTCTGTTTGAACCTGGTATCAAAGATGCTAT-TGATATTGTTCATAGCCATGGTGGCCA 1091166 Query 159633 GGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGA-CT 159691 || |||||||||||||| ||| | ||||| || || || || | || |||| || Sbjct 1091167 AGTCTATCTTGATGGTGCTAATATGAATGCTCAAGTTGGCTTAACCTCGCCTGGTGATCT 1091226 Query 159692 ATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTG 159751 | || || ||||| |||||| | ||||| || ||||||||||||||||| || || |||| Sbjct 1091227 A-GGGGCTGATGTTTGTCATTTGAACTTGCACAAGACATTCTGTATTCCTCACGGCGGTG 1091285 Query 159752 GAGGTCCTGGCGTAGGTCCTATT 159774 | ||||| || || ||||| ||| Sbjct 1091286 GTGGTCCCGGTGTTGGTCCAATT 1091308 Score = 134 bits (148), Expect = 2e-26 Identities = 182/251 (73%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 || || |||||| |||| ||||| || || ||||| |||||||| |||||||| || Sbjct 1089956 CAGAGATTTGGTGTTCCAATGGGTTATGGTGGTCCACATGCTGCTTTCTTTGCTGTAAGC 1090015 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGA---ATTGTAGGTCAGTCAGTAGATAGCGAA 158559 | |||| || | || || ||||| ||| |||| ||||||| | |||||| | Sbjct 1090016 AATAAGTTCAATCGTAAAATGCCTGGTAGACTAATTGG-GGTCAGTAA--AGATAGATTA 1090072 Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 ||| || || | ||||| || |||||||| | ||||||||||||| ||||| ||| Sbjct 1090073 GGTGATCCTGCTTTAAGATTGGCTTTACAGACTCGTGAGCAGCATATCAAGAGAGAAAAA 1090132 Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCA 158679 || |||||||| || || || || ||||| | || || |||||| | || ||||| Sbjct 1090133 GCTACCAGTAATATTTGTACTGCTCAAGCTTTACTTGCCAATATGGCCGGTGCTTATGCT 1090192 Query 158680 GCATATCATGG 158690 | ||||||||| Sbjct 1090193 GTATATCATGG 1090203 Score = 127 bits (140), Expect = 2e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 157881 TATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGA 157940 ||| ||| |||| ||| ||| |||| ||||| |||| || | ||||| ||||||| Sbjct 1089379 TATTGGTAAAGGTTACASTGGTACCAATACACCTGCAGTTATCCTTAGAAACATTCTTGA 1089438 Query 157941 GAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATT 158000 |||| ||||||||||| || || || ||||| | || || ||||| || ||| | Sbjct 1089439 ATGTCCTGAATGGTACACATCATATACACCTTATCAGCCAGAAATTTCTCAAGGTAGACT 1089498 Query 158001 GGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAA 158060 || ||| |||| || || ||||| | | | || | || ||| |||| || || || Sbjct 1089499 TGAGGCTCTATTGAACTATCAAACTGTTGTTTCTGATTTGACTGGATTACCAATTGCTAA 1089558 Query 158061 CGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || ||| || |||| |||| |||||||||||||||||||||| Sbjct 1089559 TGCGTCTTTACTAGACGAAGGAACTGCAGCAGCAGAAGCAATG 1089601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588051089740400