Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 122 2e-22 >seq2 Length=2234776 Score = 122 bits (134), Expect = 2e-22 Identities = 374/573 (65%), Gaps = 9/573 (2%) Strand=Plus/Minus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || ||| |||||||| | || || ||||| || | || ||| | |||| ||||| Sbjct 2161283 CAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAGAATGT 2161224 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 |||||||||||| | || |||| ||||||||||| || | || || ||||| ||||| Sbjct 2161223 GAGACCAGGCATTAAACCTCTCTTCTTGAGCCAGAAGATAGAAGCAAACGAGCCCGAGAA 2161164 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 ||| || || || || || || || || | || || || || | || | | ||| Sbjct 2161163 GAAAATACCTTCAACAGCAGCAAAGGCAACTAATCTTTCACCAAACAATGCTTCATCGTC 2161104 Query 48307 TGAGATCCA--GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATG 48364 |||||| | ||| ||||| || ||||| | ||||||||||| || | || || Sbjct 2161103 ATTGATCCATCGTAAA--GCCCATTCAGCCTTTTGTTTGATGCATGGAATGTTTTCAATA 2161046 Query 48365 GCCCGGAAGAGCTTCT-TGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGC 48423 || ||| | | | ||| || || |||| | ||| ||| | ||| | Sbjct 2161045 GCATTGAATAAATAATCTGC-TTCCTTTGTGTCCTTGATATAAGTATCAATCAGTAAGGA 2160987 Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||| | |||||||| | || || || ||| ||||| || |||||| | |||| || Sbjct 2160986 GTAAGTTTCAGAGTGGATGTTTTCCATCATGATTTGGAAACCATAGAAGCACTTGGCTTC 2160927 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | | || ||||| | ||||| | || | | ||| ||||| || || ||||| || Sbjct 2160926 AGGAAGTTGAACTTCAGCTGAGAAGTTTTCTACTAAATTTTCATTAACAATACCATCAGA 2160867 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 ||||||||||| || | ||| | || ||| | || |||| | | | || Sbjct 2160866 TGCAGCAAAGAAAGCTAAGACTCTTGAAATAAAAAATCTTTCATTGTCATTCAAACGGTT 2160807 Query 48604 ---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 ||| | || || || || || | ||| | ||||| ||||||||||||| || Sbjct 2160806 TTCCCAATCATGAACATCCTTTCCTAAGTCAATCTCTTCTGCAGTCCAGAAGGAAGCTTC 2160747 Query 48661 TGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 ||||| || ||||| ||| || || |||| Sbjct 2160746 AGCTTTCTTATACATTTGCCAGATTTCATGATA 2160714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532625337600