Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq11 255 3e-63 seq5 233 1e-56 >seq11 Length=408711 Score = 255 bits (282), Expect = 3e-63 Identities = 437/631 (69%), Gaps = 19/631 (3%) Strand=Plus/Plus Query 25898 AATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATT 25957 ||||||||||| ||| |||| |||||||||| |||||||| || || ||||| | | Sbjct 180813 AATAAATGCCAGTCATCATTGCTTTCAACTTTCTTCATAAATAGGTCGGGTATCCATAAT 180872 Query 25958 GCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAG 26017 ||||| || | || | ||||| | |||||||| || ||||| ||| ||| || | | Sbjct 180873 GCATAGAAGAGGTCACGAGCTCTTAACTCTTCTTTACCATGATTTTTTCTTAAGTCAAGG 180932 Query 26018 AAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTT 26077 || || || ||||| ||||||||||| | || || |||||| || |||||| Sbjct 180933 AATTCGAATATATCATTATGCCATGGTTCAAGGTATATTGCAAAAGCGCCCGGTCTTTTG 180992 Query 26078 CCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAAT 26137 ||| |||||||| |||||||| ||||| | |||||||||| |||||| |||||||| Sbjct 180993 TTTCCCCCTTGATCAACGTATCTAGCAGTGTTATTGAAAACTCGCAACATGGGAACTAAC 181052 Query 26138 CCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCA 26197 ||| | || ||||| || | || | ||| ||| | |||||||||| ||| || Sbjct 181053 CCATTCGAGGTACCGTTAGTTCCTCTTATGTAGGAACCTCTAGATCTAATATTATGAACA 181112 Query 26198 TGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAA 26257 | || ||||||||||| | || || ||| ||||||||||| | ||| | | | Sbjct 181113 CTTAAGCCTATTCCACCAGCGAACTTGGAGATACTTGCACAATCTGCCAATGTCTTGTAT 181172 Query 26258 ATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGA 26317 |||||| | || |||| | ||| | || | |||||| || || ||||||| | Sbjct 181173 ATTCCTGTGATAGAATCATCCGACATGGCCAAGAGAAAACAGGATGACAATTGCGGGAAA 181232 Query 26318 GTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATA--TCCTTCACTCAAAG 26375 | |||||||||||||||||||| || ||||||||| || | || || | || || Sbjct 181233 ATGGTTCCTGAATTAAATAATGTTGGAGTAGCATGAATAAAGTACCTCTTGGACATTAAC 181292 Query 26376 CTGTATAAGTTTCAA----GAACTTC--ATCGATATTGTAATTACTAACTTCAATAGCTG 26429 |||| ||||||| ||||| ||| |||| | | |||||||| Sbjct 181293 TCGTAT--GTTTCAAAGGCAGACTTCAAATCCTCTTTGTGTATGC------CAATAGCTA 181344 Query 26430 TTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCATCTCTAATCAAAT 26489 ||| | | |||||||||| ||| ||| || | | ||| | ||| | | | ||| | Sbjct 181345 CTCTCATCAACATATATTGRGGTGTTTC---TATAATTTTTCCTTCATATTTCAGCAAGT 181401 Query 26490 AAGATTTTTCTAAAGTTTTCAATCCAAAATA 26520 | |||||||| | |||||| || || || || Sbjct 181402 ATGATTTTTCCAGAGTTTTGAACCCGAAGTA 181432 >seq5 Length=1485630 Score = 233 bits (258), Expect = 1e-56 Identities = 432/624 (69%), Gaps = 21/624 (3%) Strand=Plus/Minus Query 25921 CTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCT 25980 ||||||| ||| |||||||||||| |||||| | ||| |||||||||||| ||||| Sbjct 766398 CTCAACTCTCTTCATAAATAAATCACTAATCCATAAGGCAACAAATAAATCTCTGGCTCT 766339 Query 25981 CATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040 |||||||||||||||||||||||| | | || | ||||||||| ||||| | ||||| Sbjct 766338 GATTTCTTCTTTTCCGTGATTCTTTCTCACGTCAATGAAATCAAAGATATCAGGATGCCA 766279 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 |||||||| || | ||| ||| ||| | ||| |||||||| || || ||||| Sbjct 766278 AGGTTCTAAGTATAAAGCGAAAGCACCAGGGCGTTTATTACCACCTTGGTCCACATATCT 766219 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAAT-CCAGTTGAAAATCCGTTTGTGC 26159 ||||| | |||||||| || ||| || | |||| ||| | || |||||| || | Sbjct 766218 AGCAGTGTTGTTGAAAACACGCATCATGGGGA-TAATACCATTAGATGTTCCGTTAGTAC 766160 Query 26160 TATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCC 26219 | ||| | || || || |||||||||| || ||| | ||| || |||||||| Sbjct 766159 CAGCAATATAAGAACCAGTTGATCTAATATTATGGATATGTAAACCAATACCACCAGCAG 766100 Query 26220 ATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTT 26279 || ||||| |||||| | || |||||| |||| |||| || ||| | | Sbjct 766099 TCTTGGAAATCAATGCACATGTTTTAAGAGTATCGTAAATGCCTTCAATTGAATCTTCCT 766040 Query 26280 TCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATG 26339 |||| | | || ||||||||||| | ||| | |||| ||| || | |||||| || | Sbjct 766039 TCATGGCAACCAAGAAACAAGAAGACATTTGAGGTTGAGGTGTACCAGCATTAAACAAAG 765980 Query 26340 TCGGTGTAGCATGAGTATAATATCCTTCA-----CTCAAAGCTGTATAAGTTTCAAGAAC 26394 | |||| |||||||| |||| ||||| ||||| ||||||||| | ||| Sbjct 765979 TAGGTGATGCATGAGTGAAATA--CTTCAAAGACATCAAA---TTATAAGTTTTGATAAC 765925 Query 26395 TTCATCGAT---ATTGTAATTACTAACTTCAATAGCTGTTCTTAACCACATATATTGAGG 26451 | ||| || || | || | || ||| ||| ||| | ||| | || || Sbjct 765924 ATTATCAATGTCATCGCCATGAATA---CCAACAGCAACTCTCATAATCATGTGCTGGGG 765868 Query 26452 TCGTTCAATTACATTATTTTCCGCATCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAA 26511 || |||| || || || | ||| |||| ||||||||| ||||| ||||| || Sbjct 765867 TCTTTCAGCGACTTTGCCATCTAC-TCT-TAAT-AAATAAGATCGCTCTAATGTTTTGAA 765811 Query 26512 TCCAAAATAATCATGATTGAAATC 26535 ||||| |||| || |||||||| Sbjct 765810 ACCAAAGTAATTATAGTTGAAATC 765787 Score = 116 bits (128), Expect = 2e-21 Identities = 344/522 (66%), Gaps = 14/522 (3%) Strand=Plus/Minus Query 24665 GTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAAT 24724 ||||| || |||||| | |||||| || |||||| | ||| ||||| ||||| || | Sbjct 767630 GTAAACTGAATAGCTGCTGCTGCTGCTTGAGTTCTCAAATAGTACATACCAGTCTTAAGA 767571 Query 24725 TTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAA 24784 ||| ||||||||||| |||||||| | || || ||| ||| ||| | | |||| Sbjct 767570 CCCTTTTTCCAACCGTAGAAATGCATAGCAGTAAGCTTTTTCATGGTTGGTTCT-CTAAT 767512 Query 24785 A-ACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAAT 24843 | | ||||| || || | ||| || || | ||| || ||||| | ||||| Sbjct 767511 GTAGATATTCATTGACTGTGATTGATCAATGAATGGACCTCTGTCAGCAGCCATATCAAT 767452 Query 24844 GATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAAT 24903 || |||| |||| || | | |||||||| || || | || ||||||| Sbjct 767451 AATGACTTTCTGAGATAATTCCCATGTAGTTTTGTACAATTCCTTCAATTCCTTTGGAAT 767392 Query 24904 ACTTGCAATATTTTGAACTGATCCATTTTCTCTCAATAGATTCAATCT-CATATTCGGTG 24962 ||| ||||||||||| || ||||| || | ||| | ||| |||| Sbjct 767391 GTTTGTAATATTTTGAATAGAGCCATTATCAG-CGATAATCTTGTTCTTCATAGAATCAT 767333 Query 24963 TCCAAAGATTAATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTC 25022 ||||| | || |||| || ||| || | ||| | || |||||| | Sbjct 767332 CCCAAATGCCCAATTCAACAAGGTCCTTAAGTAACCATGGATTAACAATTTGAAATTCAC 767273 Query 25023 CAGACAAAACTCTTCTTA--TTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATT 25080 ||| |||||||||||| | |||| || ||||| ||||||| ||||||||||| Sbjct 767272 CAGCCAAAACTCTTCTAGAGTAGATA--TTAGAAGTATATGGTTCGAAACATTCATTGAA 767215 Query 25081 TCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAA 25140 || | ||||||||||||||||| |||||||| || | ||| || || ||||| | Sbjct 767214 ACCAAGAATTTGAGAAGTAGATGCAGTTGGCATAGGAGCAACTAAAAGAGAGTTTCTAAT 767155 Query 25141 ACCATATTTAACAATCTCTTGT---TTTAATTTATCCCAATC 25179 |||| ||| ||| ||||| || || ||||||||| Sbjct 767154 TCCATGCTTAGCAA---CTTGTCTCTTCAAAGAATCCCAATC 767116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039953741125