Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1 131 3e-25 seq4 116 7e-21 >seq1 Length=2480924 Score = 131 bits (144), Expect = 3e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | || | |||| ||| ||||| | || || |||||| Sbjct 1873501 AATTTGCATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATT 1873442 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| |||| |||| || |||||||| ||||| ||||| || | ||| || || Sbjct 1873441 GTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTG 1873382 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || ||||| || ||||| || || | || | ||| |||||| || || Sbjct 1873381 ATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGA 1873322 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || |||||||||| || || |||||||| || | || || ||||| || ||||| || Sbjct 1873321 TGATTCAACTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCATGTT 1873262 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | || | |||| ||| ||||| | || || |||||| Sbjct 1873729 AATTTGCATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATT 1873670 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| |||| |||| || |||||||| ||||| ||||| || | ||| || || Sbjct 1873669 GTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTG 1873610 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || ||||| || ||||| || || | || | ||| |||||| || || Sbjct 1873609 ATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGA 1873550 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||||| || || |||||||| || | || || || || |||||||| Sbjct 1873549 TGATTCAACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | || | |||| ||| ||||| | || || |||||| Sbjct 1873957 AATTTGCATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATT 1873898 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| |||| |||| || |||||||| ||||| ||||| || | ||| || || Sbjct 1873897 GTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTG 1873838 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || ||||| || ||||| || || | || | ||| |||||| || || Sbjct 1873837 ATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGA 1873778 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||||| || || |||||||| || | || || || || |||||||| Sbjct 1873777 TGATTCAACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721 >seq4 Length=1903616 Score = 116 bits (128), Expect = 7e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| || | ||||| ||| || || || || || ||||| || || | Sbjct 1735303 ATGTTGTAGTCAGAAAGGGTTCTTCCATCTTCCAACTGCTTACCAGCAAAGATCAAACGT 1735362 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| ||||| ||||||||||| ||||| || || | || | ||| ||| || Sbjct 1735363 TGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTG 1735422 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || ||||||||||| || ||||| ||||| ||||| || || || || || || |||||| Sbjct 1735423 TCTGAAGACTCAACCTCGAGAGTAATAGTCTTACCCGTAAGGGTCTTAACGAAAATTTGC 1735482 Query 193359 AT 193360 || Sbjct 1735483 AT 1735484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899654231314800