Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 226 4e-54 seq1 123 4e-23 >seq2 Length=2234776 Score = 226 bits (250), Expect = 4e-54 Identities = 604/906 (67%), Gaps = 20/906 (2%) Strand=Plus/Minus Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAAT 17938 ||| | || ||||||||||| || || || |||| || || | ||| || |||||| Sbjct 2161555 ACTCTCTTTTCGAAGAAATTAGTTTTACCAGCCAAAGAGATATTTTCCATGAAGTCAAAT 2161496 Query 17939 GGATTAGTGGTTTTATAATATTT-TTCTTGTATTAATTCGTATAATAATCTATCTGCTAC 17997 ||||| | | || ||| || || ||| || | | |||||||||||| || Sbjct 2161495 GGATTGGAAGAGTTGTAAACCTTCTTGTTGCCCAAAGCAAGA-AGTAATCTATCTGCAAC 2161437 Query 17998 AAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGC 18057 |||||| ||||| || |||| | | ||| |||||||||| || || ||| | ||| Sbjct 2161436 AAATTCAACATACTGACACATGAGCTTGCAGTTCATACCTAATAAAGAGACAGGCAAAGC 2161377 Query 18058 ATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGA 18117 ||| | | | | || || || || |||| || | || || ||| || || | Sbjct 2161376 ATCGGTGAAGTAGCCCTTTTCGATTTCGACAGCTTCAGTAATGATCTTTTCAACAATA-A 2161318 Query 18118 TTTTGGCAATT-TATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGTA 18176 | || | | || | | ||| | |||| || || ||||| ||||| |||| Sbjct 2161317 CAGCGTCAGGTCTGTTGTTCAAATGAG---AGAATAACAAGCAAGCAAAGTCAGTATGTA 2161261 Query 18177 AACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttt 18236 |||||||||||||| | || ||||||||| || || | || ||||||| |||||| | Sbjct 2161260 AACCTTCATCTCTGCAGATCAATTCGTTAGAGAATGTGAGACCAGGCATTAAACCTCTCT 2161201 Query 18237 tttttAGCCAAAATATCGATGCGAAACTA-CTAGAAAAGAATATACCCTCAAC-GCACGC 18294 | || ||||| || || || || |||| | | || ||||| ||||| ||||| ||| || Sbjct 2161200 TCTTGAGCCAGAAGATAGAAGC-AAACGAGCCCGAGAAGAAAATACCTTCAACAGCA-GC 2161143 Query 18295 GAACGCTATTAATCTTTCAGCAAA-ACTGTATTTATTGCTCAGT-ATCCATTTTTGTGCC 18352 || || | |||||||||| |||| | || || || | ||| | |||||| | ||| Sbjct 2161142 AAAGGCAACTAATCTTTCACCAAACAATG-CTTCATCG-TCATTGATCCATCGTAAAGCC 2161085 Query 18353 CATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTT 18412 ||||| | | || || || || | || |||||||| || |||| |||| | Sbjct 2161084 CATTCAGCCTTTTGTTTGATGCATGGAATGTTTTCAATAGCATTGAATAAATAATCTGCT 2161025 Query 18413 TCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTT 18472 || || | || || |||||||| || || | || || || ||||||| || ||| || Sbjct 2161024 TCCTTTGTGTCCTTGATATAAGTATCAATCAGTAAGGAGTAAGTTTCAGAGTGGATGTTT 2160965 Query 18473 TCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTC-GCTATA 18531 ||||| || || |||| ||| || | | || || ||| ||||| || ||| | Sbjct 2160964 TCCATCATGATTTGGAAACCATAGAAGCACTTGGCTTCAGGAAGTTGAACTTCAGCT-GA 2160906 Query 18532 AAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAAC 18591 || ||||||| ||||| |||||||| ||||| |||| | || || || || || || Sbjct 2160905 GAAGTTTTCTACTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAAAGCTAAGAC 2160846 Query 18592 ATATTTAATGAAATGTTTTTCATTATCCTTGA---GATTGTTCCATTCATCTATATCTTT 18648 | ||| ||| | ||||||| || || | | || | ||| |||| | ||| || Sbjct 2160845 TCTTGAAATAAAAAATCTTTCATTGTCATTCAAACGGTTTTCCCAATCATGAACATCCTT 2160786 Query 18649 TGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTTATA 18708 | || |||| ||||| | ||||| || || | ||| || | || ||||||| | Sbjct 2160785 TCCTAAGTCAATCTCTTCTGCAGTCCAGAAGGAAGCTTCAGCTTTCTTATACATTTGCCA 2160726 Query 18709 AATATCTTCATGTTGTATAGGAAATAATATATATCGTTTATAATTTTTTATTAACATAGG 18768 || || | || || || || || | | | ||| ||||| |||| |||||| || Sbjct 2160725 GATTTCATGATATTTAATTGGGAAAAGAACAAATCTTTTATCGTTTTCCTTTAACAAGGG 2160666 Query 18769 TTCTTC 18774 ||| || Sbjct 2160665 TTCGTC 2160660 >seq1 Length=2480924 Score = 123 bits (136), Expect = 4e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| |||| || |||||||| ||||| || ||||||||||| ||| Sbjct 1873262 AACATGCAGATCTTTGTTAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCA 1873321 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | |||| || || || | ||| || ||||| || ||||| || || ||||| Sbjct 1873322 TCAGACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGAT 1873381 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || |||||| | || | ||| || ||||| | ||||| ||||| |||| || || Sbjct 1873382 CAGCAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTAC 1873441 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||||| || ||| || | || | ||||| |||||| | ||||||| ||| Sbjct 1873442 AATAT-TCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGGT 1873492 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||||||| ||||| || ||||||||||| ||| || Sbjct 1873493 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873552 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || | ||| || ||||| || ||||| || || ||||| || Sbjct 1873553 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873612 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | ||| || ||||| | ||||| ||||| |||| || || ||| Sbjct 1873613 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873672 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| || | || | ||||| |||||| | ||||||| ||| Sbjct 1873673 AT-TCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGGT 1873720 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||||||| ||||| || ||||||||||| ||| || Sbjct 1873721 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873780 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || | ||| || ||||| || ||||| || || ||||| || Sbjct 1873781 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873840 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | ||| || ||||| | ||||| ||||| |||| || || ||| Sbjct 1873841 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873900 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| || | || | ||||| |||||| | ||||||| ||| Sbjct 1873901 AT-TCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGGT 1873948 Score = 113 bits (124), Expect = 7e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||||||| ||||| || ||||||||||| ||| || Sbjct 1873949 ATGCAAATTTTCGTGAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1874008 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || | ||| || ||||| || ||||| || || ||||| || Sbjct 1874009 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1874068 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | ||| || ||||| | ||||| ||||| |||| || || ||| Sbjct 1874069 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1874128 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| || | || | ||||| |||||| | | ||||| ||| Sbjct 1874129 AT-TCAAAAGGAATCAACATTACATTTGGTGTTACGTCTTAGAGGTGGT 1874176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871862774000