Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2 217 3e-51 seq1 181 2e-40 seq4 127 4e-24 >seq2 Length=2234776 Score = 217 bits (240), Expect = 3e-51 Identities = 522/795 (66%), Gaps = 12/795 (2%) Strand=Plus/Minus Query 49649 TAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAA 49708 ||||||||| || |||||||||||||| || |||| | | || |||||||| ||||| Sbjct 2161451 TAATCTATCTGCAACAAATTCAACATACTGACACATGAGCTTGCAGTTCATACCTAATAA 2161392 Query 49709 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 49768 | || || ||||| | | | ||||| ||||| ||||||| |||| || Sbjct 2161391 AGAGACAGGCAAAGCATCGGTGAAGTAGCCCTTTTCGATTTCGACAGCTTCAGTAATGAT 2161332 Query 49769 cat---aattatattattttttgataatttatatttaatatgattcgcatatattaaACA 49825 | | || ||| | | | | || | | | |||| | ||| || || Sbjct 2161331 CTTTTCAACAATAACAGCGTCAGGTCTGTTGT---TCAAATGA---GAGAATAACAAGCA 2161278 Query 49826 TGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 49885 ||||| |||||||||||||| || || || | || ||||| ||| || || | || Sbjct 2161277 AGCAAAGTCAGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAGAATGTGAGACC 2161218 Query 49886 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 49945 |||||||| |||||||| || ||||| || || || ||||| | || ||||| || Sbjct 2161217 AGGCATTAAACCTCTCTTCTTGAGCCAGAAGATAGAAGCAAACGAGCCCGAGAAGAAAAT 2161158 Query 49946 ACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATAT 50005 ||| || ||| ||||| || | || |||| | ||||||| | || ||| || || Sbjct 2161157 ACCTTCAACAGCAGCAAAGGCAACTAATCTTTCACCAAACAATGCTTCATCGTCATTGAT 2161098 Query 50006 CCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 50065 ||| || |||||| || || |||| |||||| | || || ||||| ||||| || || Sbjct 2161097 CCATCGTAAAGCCCATTCAGCCTTTTGTTTGATGCATGGAATGTTTTCAATAGCATTGAA 2161038 Query 50066 TAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTC 50125 ||| | || | ||| | || | ||| || || |||| Sbjct 2161037 TAAATAATCTGCTTCCTTTGTGTCCTTGATATAAGTATCAATCAGTAAGGAGTAAGTTTC 2160978 Query 50126 AGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTG 50185 ||| || | |||||| ||||| || ||| || | ||||| | | || Sbjct 2160977 AGAGTGGATGTTTTCCATCATGATTTGGAAACCATAGAAGCACTTGGCTTCAGGAAGTTG 2160918 Query 50186 AACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAA 50245 |||||| | |||| ||| |||||||| ||| ||||||||||||||||| || || Sbjct 2160917 AACTTCAGCTGAGAAGTTTTCTACTAAATTTTCATTAACAATACCATCAGATGCAGCAAA 2160858 Query 50246 GAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAA---TTTTCCCAAGA 50302 ||| ||||| || | ||||||| | ||||||| || || ||| ||||||||| Sbjct 2160857 GAAAGCTAAGACTCTTGAAATAAAAAATCTTTCATTGTCATTCAAACGGTTTTCCCAATC 2160798 Query 50303 TTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTT 50362 | || ||| ||| ||| || | |||||| ||||| || || ||| | | ||| || Sbjct 2160797 ATGAACATCCTTTCCTAAGTCAATCTCTTCTGCAGTCCAGAAGGAAGCTTCAGCTTTCTT 2160738 Query 50363 ATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTTAGTAttttt 50422 ||||||||| | || ||| || || ||| || || || ||| ||| |||| |||| Sbjct 2160737 ATACATTTGCCAGATTTCATGATATTTAATTGGGAAAAGAACAAATCTTTTATCGTTTTC 2160678 Query 50423 ttCTAATATCGGTTC 50437 | ||| | ||||| Sbjct 2160677 CTTTAACAAGGGTTC 2160663 >seq1 Length=2480924 Score = 181 bits (200), Expect = 2e-40 Identities = 182/234 (78%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||||||||| |||||||| || |||||||| || | || ||| || ||||| || || Sbjct 1873494 ATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGA-ATATTGTAGTC 1873436 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||| |||||| | || || ||||| || ||||||||||| | ||| || ||||| || Sbjct 1873435 CGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGG 1873376 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || ||||| || ||||| || ||| | || ||||| |||| ||||| ||||| Sbjct 1873375 TGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTC 1873316 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||||| || |||||||||||||| || || |||| ||| |||||||| || Sbjct 1873315 AACTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCATGTT 1873262 Score = 167 bits (184), Expect = 5e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||||||||| |||||||| || |||||||| || | || ||| || ||||| || || Sbjct 1873722 ATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGA-ATATTGTAGTC 1873664 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||| |||||| | || || ||||| || ||||||||||| | ||| || ||||| || Sbjct 1873663 CGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGG 1873604 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || ||||| || ||||| || ||| | || ||||| |||| ||||| ||||| Sbjct 1873603 TGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTC 1873544 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| || |||||||||||||| || || || | || || ||||| Sbjct 1873543 AACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493 Score = 167 bits (184), Expect = 5e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||||||||| |||||||| || |||||||| || | || ||| || ||||| || || Sbjct 1873950 ATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGA-ATATTGTAGTC 1873892 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||| |||||| | || || ||||| || ||||||||||| | ||| || ||||| || Sbjct 1873891 CGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGG 1873832 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || ||||| || ||||| || ||| | || ||||| |||| ||||| ||||| Sbjct 1873831 TGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTC 1873772 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| || |||||||||||||| || || || | || || ||||| Sbjct 1873771 AACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721 Score = 167 bits (184), Expect = 5e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||||||||||||||| || |||||||| || | || ||| || ||||| || || | Sbjct 1874176 ACCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGA-ATATTGTAGTCCG 1874118 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 ||| |||||| | || || ||||| || ||||||||||| | ||| || ||||| |||| Sbjct 1874117 ATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTG 1874058 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| || ||||| || ||| | || ||||| |||| ||||| ||||| | Sbjct 1874057 GAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAA 1873998 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||| || |||||||||||||| || || || | || || ||||| Sbjct 1873997 CTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949 Score = 165 bits (182), Expect = 2e-35 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATA 192357 ||| ||| |||||||| | ||||| || || ||||| | ||||| ||| ||| || || Sbjct 1632682 GTTCAATGATACCACCACGGAGACGCAAGACCAAATGGAGAGTAGACTCCTTTTGA-ATG 1632740 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || || ||||| || |||| | | || || ||||| |||||||||||||| || | |||| Sbjct 1632741 TTGTAGTCAGACAAAGTTCTTCCGTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGT 1632800 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 ||||| ||||| |||||||| || ||||| || || |||| ||||| |||| || Sbjct 1632801 TGATCTGGTGGAATTCCTTCCTTGTCTTGAATCTTGCTTTTGACATTGTCAATAGTGTCG 1632860 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAA 192527 || ||||| ||||| | ||||| || ||||||||||| || |||| ||| Sbjct 1632861 GAAGATTCAACTTCCAAGGTAATAGTCTTACCAGTTAAGGTCTTAACAAA 1632910 >seq4 Length=1903616 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||||| || ||||| | || | || || ||| || || ||||| Sbjct 1735257 ACCACCACGGAGACGTAAGACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGA 1735316 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | |||| | |||| ||||| || |||||||||||||| || | |||||||| || || Sbjct 1735317 AAGGGTTCTTCCATCTTCCAACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGG 1735376 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||| ||||| || ||| || ||||| || | ||||| || || || Sbjct 1735377 AATTCCTTCTTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCAAC 1735436 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||| || ||||| || | || |||| || || ||||| Sbjct 1735437 CTCGAGAGTAATAGTCTTACCCGTAAGGGTCTTAACGAAAATTTGCAT 1735484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479810795250