Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 181 3e-40 seq2 147 6e-30 seq11 136 1e-26 seq7 93.3 1e-13 >seq5 Length=1485630 Score = 181 bits (200), Expect = 3e-40 Identities = 637/979 (65%), Gaps = 28/979 (3%) Strand=Plus/Minus Query 155475 GGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCT 155534 || ||| |||| |||||| || || || ||||| |||||| ||||| || || || Sbjct 766838 GGATAATAATTTCTATCAATGATTTTGTTCAAATTATGAACCAAGACCTTAGTGACTTCA 766779 Query 155535 GCTAATTTCACATAGTCAAA--------TGTTT-TATCCTCATTTACAAACATACCAAGA 155585 ||||||| || | || | | || |||| || | ||||| || | | Sbjct 766778 TGTAATTTCTCAAAATCGTACCAACCCTTCTTACTATCACCAGTAACAAAAGTAGGTAAA 766719 Query 155586 CCAATAGACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACAATCTC 155644 ||| ||| |||| ||||||||| ||| || | | | | |||||| ||||| || Sbjct 766718 GCAAGAGAAGCCAAATTACATACAGCAACTTCATCAGGAGAAGA-GTATTCAACAATTTC 766660 Query 155645 ACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACA 155704 |||||| | ||| |||||| || | |||||| || || || || ||||| Sbjct 766659 ACAGCATAAATTACTTGATTTGATGACACCAAGATTCTTTTGATTGGACTTCTCATTACA 766600 Query 155705 AGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAG 155764 ||| ||||| || || ||| ||||| || || || | || || |||| ||| Sbjct 766599 AGCGTCCTTATAAAGCATGAATGGGACACCAGTTTCAGTTTGAGCTTCCAAAATAGAGTA 766540 Query 155765 CCAGAGGTCACGGGCATTAATT-TGCTTGTTGTATCTGCCTTCCGACTCATAT--TTCAT 155821 ||| || | | || || | | | ||| | ||| ||||| |||||| ||||| Sbjct 766539 CCAAAGTTTTTGAGCTTTCACTGTTCTTACAGC-TCTTCCTTCACGTTCATATCTTTCAT 766481 Query 155822 ATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCA 155881 | | ||| ||| | || | ||||||||||||| | || || | || || | Sbjct 766480 ACAAAGC-TTCAA-ATTCTTTACCGTAACAATCAGATAAACCTGGAGCTTCATTAGGTGA 766423 Query 155882 AAACAGCGACCAAATTTTATTACC-GATTACACGCTC--CATAAATACATCACTCGCCCA 155938 ||| | |||||| | | || | | || ||| |||||||| |||||| ||| Sbjct 766422 AAAGAAAGACCAA---TCACCGCCAGCCTCAACTCTCTTCATAAATAAATCACTAATCCA 766366 Query 155939 AATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTGATTCTTCCGTAGCT 155997 | ||| || | || || || | ||| | || | | ||||||||||| | | | Sbjct 766365 TAAGGCAACAAATAAATCTCTGGC-TCTGATTTCTTCTTTTCCGTGATTCTTTCTCACGT 766307 Query 155998 CTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC 156057 | | ||| || ||||||||||| || || | || | ||| ||| |||| | Sbjct 766306 CAATGAAATCAAAGATATCAGGATGCCAAGGTTCTAAGTATAAAGCGAAAGCACCAGGGC 766247 Query 156058 ---TCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAA 156114 | || ||||| || || ||||| | |||||| || ||||| |||| | ||| || | Sbjct 766246 GTTTATTACCACCTTGGTCCACATATCTAGCAGTGTTGTTGAAAACACGCATCATGGGGA 766187 Query 156115 TAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTAT 156174 |||||||||| || || || || || || ||||| ||||||| ||| | || ||||| Sbjct 766186 TAATACCATTAGATGTTCCGTTAGTACCAGCAATATAAGAACCAGTTGATCTAATATTAT 766127 Query 156175 GAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTAT 156234 | ||||||| ||||||||||| | || ||||| || ||| || | ||||| Sbjct 766126 GGATATGTAAACCAATACCACCAGCAGTCTTGGAAATCAATGCACATGTTTTAAGAGTAT 766067 Query 156235 TGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAG 156294 | |||| |||||||| ||||| || | ||| | | | | || ||| | ||||| Sbjct 766066 CGTAAATGCCTTCAATTGAATCTTCCTTCATGGCAACCAAGAAACAAGAAGACATTTGAG 766007 Query 156295 GTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACA 156354 || | ||||| ||||| || || | ||||||| ||||||| | |||||||| ||||| Sbjct 766006 GTTGAGGTGTACCAGCATTAAACAAAGTAGGTGATGCATGAGTGAAATACTTCAAAGACA 765947 Query 156355 TATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCC 156414 | ||| || || | ||| || |||| | | || ||||||| | || || | Sbjct 765946 TCAAATTATAAGTTTTGATAACATTATCAATGTCATCGCCATGAATACCAACAGCAACTC 765887 Query 156415 TCATCCACATATGCTGAGG 156433 |||| ||| ||||| || Sbjct 765886 TCATAATCATGTGCTGGGG 765868 >seq2 Length=2234776 Score = 147 bits (162), Expect = 6e-30 Identities = 399/601 (66%), Gaps = 15/601 (2%) Strand=Plus/Plus Query 133065 ACGATAATAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAA 133124 ||||||| || |||||| | ||||||||||| | | || || ||||| |||||||| | Sbjct 2160682 ACGATAAAAGATTTGTTCTTTTCCCAATTAAATATCATGAAATCTGGCAAATGTATAAGA 2160741 Query 133125 AACAGCAAGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACT 133184 || ||| || || |||||| || || | || ||| || || | | Sbjct 2160742 AAGCTGAAGCTTCCTTCTGGACTGCAGAAGAGATTGACTTAGGAAAGGATGTTCATGATT 2160801 Query 133185 GGGAAGCCCTT---ACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTG 133241 ||||| || | | || |||||| | ||||||||| | | ||||| || |||| Sbjct 2160802 GGGAAAACCGTTTGAATGACAATGAAAGATTTTTTATTTCAAGAGTCTTAGCTTTCTTTG 2160861 Query 133242 CTGCGAGTGATGGTATTGTTCTTGAAAATTTAG--GAACACGGTTTATGGGAGAAGTTCA 133299 |||| ||||||||||||| ||||||||||| ||| || || | |||||||| Sbjct 2160862 CTGCATCTGATGGTATTGTTAATGAAAATTTAGTAGAAAAC--TTCTCAGCTGAAGTTCA 2160919 Query 133300 ACTGGCCGAAGCC-CGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTA 133358 ||| | |||||| ||| ||| ||||| | || || ||||||||| ||||| ||| Sbjct 2160920 ACTTCCTGAAGCCAAGTG-CTTCTATGGTTTCCAAATCATGATGGAAAACATCCACTCTG 2160978 Query 133359 TCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACA--AACT 133416 || || || || ||||||||||| ||||| || || |||||| | | | Sbjct 2160979 AAACTTACTCCTTACTGATTGATACTTATATCAAGGACAC--AAAGGAAGCAGATTATTT 2161036 Query 133417 ATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATG 133476 |||||| || ||| | |||| || || ||| | || |||| |||||| | ||| Sbjct 2161037 ATTCAATGCTATTGAAAACATTCCATGCATCAAACAAAAGGCTGAATGGGCTTTACGATG 2161096 Query 133477 GATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGG 133536 |||| | ||| | || |||| | | | ||||| ||||||| || || || Sbjct 2161097 GATCAATGACGATGAAGCATTGTTTGGTGAAAGATTAGTTGCCTTTGCTGCTGTTGAAGG 2161156 Query 133537 CAtttttttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTAC 133595 ||||| ||| || |||| ||| ||||| || ||||| || ||| | ||| | | | Sbjct 2161157 TATTTTCTTCTCGGGCTCGTT-TGCTTCTATCTTCTGGCTCAAGAAGAGAGGTTTAATGC 2161215 Query 133596 CTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTG 133655 |||| || || ||||||||| | || | || || || | | || || || |||| Sbjct 2161216 CTGGTCTCACATTCTCTAACGAATTGATCTGCAGAGATGAAGGTTTACATACTGACTTTG 2161275 Query 133656 C 133656 | Sbjct 2161276 C 2161276 >seq11 Length=408711 Score = 136 bits (150), Expect = 1e-26 Identities = 584/918 (64%), Gaps = 33/918 (4%) Strand=Plus/Plus Query 155600 ATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAG 155658 ||| ||||| || || |||| || | || ||| | ||||| |||||||| || |||| Sbjct 180530 ATTGCATACAGCTGTTTCCTCTGGTGACGA-GTACTGAACAATTTCACAGCATAGATTAG 180588 Query 155659 AACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATA 155718 | ||||| || || | |||||||||||| |||||||| ||||||| |||||| || | Sbjct 180589 ATGATTTGATAGTTCCGAGATTCTTCTGGTTTGATTTACTATTACAAGAATCCTTATAAA 180648 Query 155719 GAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGG 155778 | ||| | || ||| ||||| | || | || || || | |||| | | ||| Sbjct 180649 GCATGAAAGGTCCTCCAGTCTCTACTTGAGATTCAAGTATACTGTGCCATAATTTCTGGG 180708 Query 155779 CATT---AATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGT 155835 | || || | || || | || ||||| | | |||||| |||||||| || Sbjct 180709 CCTTCACAACT--CTCGTAA-ACCTCCCTTCAGCAACGTATTTCGTATACAGCTTTTCAA 180765 Query 155836 AATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAA 155895 | ||||||| | ||| |||||||| | | | | || |||| | ||| Sbjct 180766 ATTCCTCACTACACGTATCGGCAAGTCCAGGCGAATCAACAGGTGAAAATAAATGCCAGT 180825 Query 155896 TTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGT 155955 | ||| | || || |||||||| || ||| | |||||||| |||| Sbjct 180826 CATCATTGCTTTCAACTTTCTTCATAAATAGGTCGGGTATCCATAATGCATAGAAGAGGT 180885 Query 155956 CCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATAT 156015 | | || || |||| || | || ||||| || | || || | |||||| |||| Sbjct 180886 CACGAGCTCTTAACTCTTCTTTACCATGATTTTTTCTTAAGTCAAGGAATTCGAATATAT 180945 Query 156016 CAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGAT 156072 || ||| ||| || || || || |||||| || || ||| || || |||| Sbjct 180946 CATTATGCCATGGTTCAAGGTATATTGCAAAAGCGCCCGGTCTTTTGTTTCCCCCTTGAT 181005 Query 156073 CTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGC 156132 | || || | |||||| |||||||| || | | ||| |||| | ||||| || || | Sbjct 181006 CAACGTATCTAGCAGTGTTATTGAAAACTCGCAACATGGGAACTAACCCATTCGAGGTAC 181065 Query 156133 CATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATAC 156192 | || ||||| | || | ||||| || | || |||||||| | || || || | Sbjct 181066 CGTTAGTTCCTCTTATGTAGGAACCTCTAGATCTAATATTATGAACACTTAAGCCTATTC 181125 Query 156193 CACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAG 156252 |||| | | || || || || || || | || ||| | || ||| |||| Sbjct 181126 CACCAGCGAACTTGGAGATACTTGCACAATCTGCCAATGTCTTGTATATTCCTGTGATAG 181185 Query 156253 AATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGT 156312 ||||||| ||| | | ||| | || || ||||| || ||||| | | Sbjct 181186 AATCATCCGACATGGCCAAGAGAAAACAGGATGACAATTGCGGGAAAATGGTTCCTGAAT 181245 Query 156313 TGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC-- 156370 | |||| ||| || || ||||||||||| ||| | || ||||| | |||||||| || Sbjct 181246 TAAATAATGTTGGAGTAGCATGAATAAAGTACCTCTTGGACATTAACTCGTATGTTTCAA 181305 Query 156371 -------CTT--AATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCA 156421 ||| |||| ||| || ||| || | |||| || |||||| | Sbjct 181306 AGGCAGACTTCAAATCCTCT-----TT------GTGTATGCCAATAGCTACTCTCATCAA 181354 Query 156422 CATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAG 156481 ||||| || || |||| ||| ||| ||| | ||| | ||||| |||||| Sbjct 181355 CATATATTGRGGTGTTTCTATAATTTTTCCTTCATATTTCAGCAAGTATGATTTTTCCAG 181414 Query 156482 AGTTTTAAACCCGAAATA 156499 |||||| |||||||| || Sbjct 181415 AGTTTTGAACCCGAAGTA 181432 Score = 91.5 bits (100), Expect = 4e-13 Identities = 118/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 || || | |||||| | || || | |||||||||||| | | || ||||||||| || Sbjct 163941 GCGCCATAAGCAATAACGCAGTCTCTTTCCATTTCACCCAATCTCAAACCACCATCTCTT 164000 Query 233333 GACCTACC--CTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390 || || || ||| | | ||||||||||||||||| ||| || || ||||||| || Sbjct 164001 GATCTGCCTTCTGTA--GGTTGACGAGTTAAAACAGCTCTAGGGCCTCTAGCACGAGCAT 164058 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAA 233431 |||||||| ||||||||||||| || ||||||| Sbjct 164059 GCATTTTATCCAACACCATATGCTTCAACTTCTGATAATAA 164099 >seq7 Length=1328185 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | || |||||||||||| || || || || | || ||||||||| Sbjct 617530 AGAATTTCCTTAAGACGGGGAACACCCAATGTAACATTT---TTAGCCGAAACACCAGCG 617474 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 | |||||||||||||| || | |||||||| ||||||||||| ||| || ||||| Sbjct 617473 TAATGGAAAGTATTCAGTGTCATTTGAGTAGCAGGCTCACCAATTGATTGGGCTGCAATA 617414 Query 301933 ATACCAACCATTTCTCCTGG 301952 | || |||||||| || || Sbjct 617413 ACGCCTACCATTTCGCCAGG 617394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817317135055