Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4 158 1e-33 seq1 138 1e-27 >seq4 Length=1903616 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || ||||| |||||||| ||||| || || | | Sbjct 1735484 ATGCAAATTTTCGTTAAGACCCTTACGGGTAAGACTATTACTCTCGAGGTTGAGTCTTCA 1735425 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| ||||||||||||||||| ||||| |||||| Sbjct 1735424 GACACCATTGACAATGTCAAGTCTAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 1735365 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || || ||| |||| ||| |||| | | || || || ||| Sbjct 1735364 CAACGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGAAGAACCCTTTCTGACTACAAC 1735305 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || |||||||||||||| || || ||||| || || Sbjct 1735304 ATCCAAAAGGAATCGACCCTCCATTTGGTCTTACG 1735270 >seq1 Length=2480924 Score = 138 bits (152), Expect = 1e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24713 TTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTA 24772 ||| |||| || |||| ||||| |||||||| | ||||| ||| | ||||||| | Sbjct 1632910 TTTGTTAAGACCTTAACTGGTAAGACTATTACCTTGGAAGTTGAATCTTCCGACACTATT 1632851 Query 24773 GAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTG 24832 || | || ||| ||||| |||||||| |||||||| || || |||||||| |||||| Sbjct 1632850 GACAATGTCAAAAGCAAGATTCAAGACAAGGAAGGAATTCCACCAGATCAACAGCGTTTG 1632791 Query 24833 ATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAG 24892 |||||||| || || || | || || |||| |||| || || |||||||||||| Sbjct 1632790 ATCTTTGCTGGTAAGCAATTAGAAGACGGAAGAACTTTGTCTGACTACAACATTCAAAAG 1632731 Query 24893 GAATCGACACTACACTTGGTGTTGCG 24918 || || || || || ||||| ||||| Sbjct 1632730 GAGTCTACTCTCCATTTGGTCTTGCG 1632705 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || | || |||||||| || || | ||||| ||| | | Sbjct 1873265 ATGCAGATCTTTGTTAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873324 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| ||||| || || || ||||| Sbjct 1873325 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873384 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | |||||||| || || || | || || ||| | || || || || Sbjct 1873385 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873444 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||||||||||||| ||| |||| |||||||| || Sbjct 1873445 ATTCAAAAGGAATCAACATTACATTTGGTGTTACG 1873479 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || | || |||||||| || || | ||||| ||| | | Sbjct 1873493 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873552 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| ||||| || || || ||||| Sbjct 1873553 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873612 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | |||||||| || || || | || || ||| | || || || || Sbjct 1873613 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873672 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||||||||||||| ||| |||| |||||||| || Sbjct 1873673 ATTCAAAAGGAATCAACATTACATTTGGTGTTACG 1873707 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || | || |||||||| || || | ||||| ||| | | Sbjct 1873721 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873780 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| ||||| || || || ||||| Sbjct 1873781 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873840 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | |||||||| || || || | || || ||| | || || || || Sbjct 1873841 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873900 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||||||||||||| ||| |||| |||||||| || Sbjct 1873901 ATTCAAAAGGAATCAACATTACATTTGGTGTTACG 1873935 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || | || |||||||| || || | ||||| ||| | | Sbjct 1873949 ATGCAAATTTTCGTGAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1874008 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| ||||| || || || ||||| Sbjct 1874009 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1874068 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | |||||||| || || || | || || ||| | || || || || Sbjct 1874069 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1874128 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||||||||||||| ||| |||| |||||||| || Sbjct 1874129 ATTCAAAAGGAATCAACATTACATTTGGTGTTACG 1874163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897515644200