Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1 136 6e-27 >seq1 Length=2480924 Score = 136 bits (150), Expect = 6e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | || || || || || ||||| || || | || || ||| ||| | Sbjct 1873494 TGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA- 1873552 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| | ||||| || | ||| || ||| || ||||| |||||||| ||||| Sbjct 1873553 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873612 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||||||||||| ||||| || || |||||||| || |||| || | || || ||| Sbjct 1873613 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873672 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||| ||||| || | ||||| || ||||| ||||||| |||| Sbjct 1873673 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGGTA 1873721 Score = 136 bits (150), Expect = 6e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | || || || || || ||||| || || | || || ||| ||| | Sbjct 1873722 TGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA- 1873780 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| | ||||| || | ||| || ||| || ||||| |||||||| ||||| Sbjct 1873781 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873840 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||||||||||| ||||| || || |||||||| || |||| || | || || ||| Sbjct 1873841 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873900 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||| ||||| || | ||||| || ||||| ||||||| |||| Sbjct 1873901 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGGTA 1873949 Score = 131 bits (144), Expect = 3e-25 Identities = 172/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | || || || || || ||||| || || | || || ||| ||| | Sbjct 1873950 TGCAAATTTTCGTGAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA- 1874008 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| | ||||| || | ||| || ||| || ||||| |||||||| ||||| Sbjct 1874009 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1874068 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||||||||||| ||||| || || |||||||| || |||| || | || || ||| Sbjct 1874069 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1874128 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAAT 146266 || ||||| ||||| || | ||||| || ||||| | ||||| ||| ||||| Sbjct 1874129 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTTAGAGGTGGTTGCTAAAT 1874184 Score = 127 bits (140), Expect = 3e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || || | || || || || || ||||| || || | || || ||| ||| | Sbjct 1873266 TGCAGATCTTTGTTAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA- 1873324 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| | ||||| || | ||| || ||| || ||||| |||||||| ||||| Sbjct 1873325 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873384 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||||||||||| ||||| || || |||||||| || |||| || | || || ||| Sbjct 1873385 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873444 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||| ||||| || | ||||| || ||||| ||||||| |||| Sbjct 1873445 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGGTA 1873493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786166252593800