Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq1 140 2e-28
seq4 114 1e-20
>seq1
Length=2480924
Score = 140 bits (154), Expect = 2e-28
Identities = 173/234 (74%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || || | ||| | ||||||||| | || ||||| |||||||| || || ||||
Sbjct 1873491 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1873432
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || || || | ||| || |||||| | || | |||||||||||| || |||
Sbjct 1873431 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1873372
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||||| || |||||||| ||| || | |||||| | || | |||||| || ||| ||
Sbjct 1873371 ATACCTTCCTTGTCTTG-AATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873313
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792
||| | || || ||||| ||||| ||||| |||||||| |||||||| || ||
Sbjct 1873312 TTCTAATGTGATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCATGTTGAA 1873259
Score = 125 bits (138), Expect = 6e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || || | ||| | ||||||||| | || ||||| |||||||| || || ||||
Sbjct 1874175 CCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1874116
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || || || | ||| || |||||| | || | |||||||||||| || |||
Sbjct 1874115 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1874056
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||||| || |||||||| ||| || | |||||| | || | |||||| || ||| ||
Sbjct 1874055 ATACCTTCCTTGTCTTG-AATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873997
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| | || || ||||| ||||| ||||| || || || || |||||
Sbjct 1873996 TTCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949
Score = 122 bits (134), Expect = 7e-23
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || || | ||| | ||||||||| | || ||||| |||||||| || || ||||
Sbjct 1873719 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1873660
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || || || | ||| || |||||| | || | |||||||||||| || |||
Sbjct 1873659 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1873600
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||||| || |||||||| ||| || | |||||| | || | |||||| || ||| ||
Sbjct 1873599 ATACCTTCCTTGTCTTG-AATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873541
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| | || || ||||| ||||| || || || || || || |||||
Sbjct 1873540 TTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493
Score = 122 bits (134), Expect = 7e-23
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || || | ||| | ||||||||| | || ||||| |||||||| || || ||||
Sbjct 1873947 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1873888
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || || || | ||| || |||||| | || | |||||||||||| || |||
Sbjct 1873887 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1873828
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||||| || |||||||| ||| || | |||||| | || | |||||| || ||| ||
Sbjct 1873827 ATACCTTCCTTGTCTTG-AATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873769
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| | || || ||||| ||||| || || || || || || |||||
Sbjct 1873768 TTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721
Score = 116 bits (128), Expect = 3e-21
Identities = 150/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||||| |||||||| || || || || ||||||||||| || || | | || |
Sbjct 1632704 ACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTTCC 1632763
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| || | ||| || |||||| | ||||| | || ||||| || ||||| || || ||
Sbjct 1632764 GTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTT 1632823
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | || ||||||| | || | |||||| ||| ||| ||||| | || ||
Sbjct 1632824 GTCTTGAATCTTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCAACTTCCAAGGTAAT 1632883
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAA 29777
||| || ||||||||||| ||||||||
Sbjct 1632884 AGTCTTACCAGTTAAGGTCTTAACAAA 1632910
>seq4
Length=1903616
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637
|||||||| || || ||||| ||||| ||||| || || | || ||| | ||| ||
Sbjct 1735276 ACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCATCTTCC 1735335
Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697
| || || |||||| | ||||| | ||| ||||| || ||||| || |||||||||||
Sbjct 1735336 AACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTG- 1735394
Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756
||| || | |||||| | || | ||||| ||| || || || ||||| ||||| ||
Sbjct 1735395 AATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATAGTCTT 1735454
Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || | ||| ||||| || || |||||
Sbjct 1735455 ACCCGTAAGGGTCTTAACGAAAATTTGCAT 1735484
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385219129577115
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |