Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq1 174 3e-38
seq4 132 9e-26
seq2 87.8 4e-12
>seq1
Length=2480924
Score = 174 bits (192), Expect = 3e-38
Identities = 176/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| ||||| | ||| | || || || | || ||||| || || ||||| || || |
Sbjct 1873493 TACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCG 1873434
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
||||| ||| |||||||||| ||| |||||||||||||| |||||||| |||||||| |
Sbjct 1873433 ATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTG 1873374
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || |||||||| ||||||||||| || ||||| ||||| || || | ||| |
Sbjct 1873373 GAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAA 1873314
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| || || || || || || ||||| ||||| ||||| ||||||||
Sbjct 1873313 CTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCAT 1873265
Score = 167 bits (184), Expect = 5e-36
Identities = 171/221 (77%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||||| || || || |||||||| || || || || || || ||||
Sbjct 1632691 TACCACCACGGAGACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAG 1632750
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| | | |||| |||||||||| ||| || ||||||||||| | | ||||||||||| |
Sbjct 1632751 ACAAAGTTCTTCCGTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTG 1632810
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCT 82760
| ||||||||||| ||||||||| |||||||| ||||| ||||| || || || |||
Sbjct 1632811 GAATTCCTTCCTTGTCTTGAATC-TTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCA 1632869
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801
|||||||| || || ||||| || || || ||||| |||||
Sbjct 1632870 ACTTCCAAGGTAATAGTCTTACCAGTTAAGGTCTTAACAAA 1632910
Score = 165 bits (182), Expect = 2e-35
Identities = 174/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| ||||| | ||| | || || || | || ||||| || || ||||| || || |
Sbjct 1873721 TACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCG 1873662
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
||||| ||| |||||||||| ||| |||||||||||||| |||||||| |||||||| |
Sbjct 1873661 ATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTG 1873602
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || |||||||| ||||||||||| || ||||| ||||| || || | ||| |
Sbjct 1873601 GAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAA 1873542
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| || || || || || || ||||| ||||| || || || |||||
Sbjct 1873541 CTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493
Score = 165 bits (182), Expect = 2e-35
Identities = 174/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| ||||| | ||| | || || || | || ||||| || || ||||| || || |
Sbjct 1873949 TACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCG 1873890
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
||||| ||| |||||||||| ||| |||||||||||||| |||||||| |||||||| |
Sbjct 1873889 ATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTG 1873830
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || |||||||| ||||||||||| || ||||| ||||| || || | ||| |
Sbjct 1873829 GAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAA 1873770
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| || || || || || || ||||| ||||| || || || |||||
Sbjct 1873769 CTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721
Score = 165 bits (182), Expect = 2e-35
Identities = 181/240 (75%), Gaps = 3/240 (1%)
Strand=Plus/Minus
Query 82571 CATTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTAT 82630
|||||| || ||| ||||| | ||| | || || || | || ||||| || || ||
Sbjct 1874185 CATTTAGCA---ACCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAAT 1874129
Query 82631 ATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTG 82690
||| || || |||||| ||| |||||||||| ||| |||||||||||||| ||||||||
Sbjct 1874128 ATTGTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTG 1874069
Query 82691 TTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750
|||||||| || || |||||||| ||||||||||| || ||||| ||||| || ||
Sbjct 1874068 CTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTC 1874009
Query 82751 ATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||| ||||| || || || || || || ||||| ||||| || || || |||||
Sbjct 1874008 TGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949
>seq4
Length=1903616
Score = 132 bits (146), Expect = 9e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
|| || || || || ||||| || || || || || ||||| || |||| || |||||
Sbjct 1735276 ACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCATCTTCC 1735335
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
| || || ||||||||||| | | ||||||||||||||| |||||||| || ||||||
Sbjct 1735336 AACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 1735395
Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781
||||| | || ||||| ||||| || || || || || || | ||| || |||||
Sbjct 1735396 ATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATAGTCTTA 1735455
Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTATT 82814
|| || | ||||| || || || ||||| |||
Sbjct 1735456 CCCGTAAGGGTCTTAACGAAAATTTGCATGATT 1735488
>seq2
Length=2234776
Score = 87.8 bits (96), Expect = 4e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 143948 AGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCTTGCATATAGAACT 144007
||||||||| |||||||||||||||| | | ||||| || || ||||| ||| |
Sbjct 1397855 AGATAAAGACGAGTGGACTACTTGGACAGCCCGTACAGATCCTGTTTTACATATTGAATT 1397914
Query 144008 TAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTAGCAAAAAT 144067
| || ||||| ||| | || | ||||| || |||| |||||||| || || ||
Sbjct 1397915 ACGCAGGTGGGCAGATATATTAGTGATAGCACCACTAACTGCAAATACTTTGAGTAAGAT 1397974
Query 144068 AGCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATA 144120
|||| |||| |||| |||||| || | || | | || ||||| ||| |||
Sbjct 1397975 AGCCCTTGGTTTATGTGATAATCTATTGACTAATGTGGTCAGAGCTTGGAATA 1398027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981827011305085
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |