Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1 174 3e-38 seq4 132 9e-26 seq2 87.8 4e-12 >seq1 Length=2480924 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | ||| | || || || | || ||||| || || ||||| || || | Sbjct 1873493 TACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCG 1873434 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||||| ||| |||||||||| ||| |||||||||||||| |||||||| |||||||| | Sbjct 1873433 ATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTG 1873374 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||| || ||||| ||||| || || | ||| | Sbjct 1873373 GAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAA 1873314 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || || || ||||| ||||| ||||| |||||||| Sbjct 1873313 CTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCAT 1873265 Score = 167 bits (184), Expect = 5e-36 Identities = 171/221 (77%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || || || |||||||| || || || || || || |||| Sbjct 1632691 TACCACCACGGAGACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAG 1632750 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | |||| |||||||||| ||| || ||||||||||| | | ||||||||||| | Sbjct 1632751 ACAAAGTTCTTCCGTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTG 1632810 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCT 82760 | ||||||||||| ||||||||| |||||||| ||||| ||||| || || || ||| Sbjct 1632811 GAATTCCTTCCTTGTCTTGAATC-TTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCA 1632869 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||||||| || || ||||| || || || ||||| ||||| Sbjct 1632870 ACTTCCAAGGTAATAGTCTTACCAGTTAAGGTCTTAACAAA 1632910 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | ||| | || || || | || ||||| || || ||||| || || | Sbjct 1873721 TACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCG 1873662 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||||| ||| |||||||||| ||| |||||||||||||| |||||||| |||||||| | Sbjct 1873661 ATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTG 1873602 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||| || ||||| ||||| || || | ||| | Sbjct 1873601 GAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAA 1873542 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || || || ||||| ||||| || || || ||||| Sbjct 1873541 CTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | ||| | || || || | || ||||| || || ||||| || || | Sbjct 1873949 TACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCG 1873890 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||||| ||| |||||||||| ||| |||||||||||||| |||||||| |||||||| | Sbjct 1873889 ATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTG 1873830 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||| || ||||| ||||| || || | ||| | Sbjct 1873829 GAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAA 1873770 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || || || ||||| ||||| || || || ||||| Sbjct 1873769 CTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721 Score = 165 bits (182), Expect = 2e-35 Identities = 181/240 (75%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 82571 CATTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTAT 82630 |||||| || ||| ||||| | ||| | || || || | || ||||| || || || Sbjct 1874185 CATTTAGCA---ACCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAAT 1874129 Query 82631 ATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTG 82690 ||| || || |||||| ||| |||||||||| ||| |||||||||||||| |||||||| Sbjct 1874128 ATTGTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTG 1874069 Query 82691 TTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 |||||||| || || |||||||| ||||||||||| || ||||| ||||| || || Sbjct 1874068 CTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGTCAATAGTGTC 1874009 Query 82751 ATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||| ||||| || || || || || || ||||| ||||| || || || ||||| Sbjct 1874008 TGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949 >seq4 Length=1903616 Score = 132 bits (146), Expect = 9e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || || || || || ||||| || || || || || ||||| || |||| || ||||| Sbjct 1735276 ACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCATCTTCC 1735335 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | || || ||||||||||| | | ||||||||||||||| |||||||| || |||||| Sbjct 1735336 AACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 1735395 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| | || ||||| ||||| || || || || || || | ||| || ||||| Sbjct 1735396 ATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATAGTCTTA 1735455 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || || | ||||| || || || ||||| ||| Sbjct 1735456 CCCGTAAGGGTCTTAACGAAAATTTGCATGATT 1735488 >seq2 Length=2234776 Score = 87.8 bits (96), Expect = 4e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 143948 AGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCTTGCATATAGAACT 144007 ||||||||| |||||||||||||||| | | ||||| || || ||||| ||| | Sbjct 1397855 AGATAAAGACGAGTGGACTACTTGGACAGCCCGTACAGATCCTGTTTTACATATTGAATT 1397914 Query 144008 TAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTAGCAAAAAT 144067 | || ||||| ||| | || | ||||| || |||| |||||||| || || || Sbjct 1397915 ACGCAGGTGGGCAGATATATTAGTGATAGCACCACTAACTGCAAATACTTTGAGTAAGAT 1397974 Query 144068 AGCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATA 144120 |||| |||| |||| |||||| || | || | | || ||||| ||| ||| Sbjct 1397975 AGCCCTTGGTTTATGTGATAATCTATTGACTAATGTGGTCAGAGCTTGGAATA 1398027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981827011305085