Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 140 2e-28 seq4 96.9 2e-15 >seq1 Length=2480924 Score = 140 bits (154), Expect = 2e-28 Identities = 175/235 (74%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||||||||||||||||| || || ||||| || ||||| || || Sbjct 1873492 ACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGA 1873433 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| || ||||| ||||| ||||| || | | ||||||||| | || Sbjct 1873432 TAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGG 1873373 Query 33642 CACACCTTCTTTGTCGGCAAT-TTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | |||||| ||||| ||| || || || |||| ||| | ||||| |||||| Sbjct 1873372 AATACCTTCCTTGTCTTGAATCTTACTCTT--GACATTGTCAATAGTGTCTGATGATTCA 1873315 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 || || | ||||| |||||||| || || || || |||||||||||||| |||| Sbjct 1873314 ACTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCAT-GTTG 1873261 Score = 127 bits (140), Expect = 1e-24 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||||||||||||||||| || || ||||| || ||||| || || Sbjct 1873720 ACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGA 1873661 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| || ||||| ||||| ||||| || | | ||||||||| | || Sbjct 1873660 TAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGG 1873601 Query 33642 CACACCTTCTTTGTCGGCAAT-TTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | |||||| ||||| ||| || || || |||| ||| | ||||| |||||| Sbjct 1873600 AATACCTTCCTTGTCTTGAATCTTACTCTT--GACATTGTCAATAGTGTCTGATGATTCA 1873543 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| |||||||| || || || || || || || |||||| Sbjct 1873542 ACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCATA 1873492 Score = 127 bits (140), Expect = 1e-24 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||||||||||||||||| || || ||||| || ||||| || || Sbjct 1873948 ACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGA 1873889 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| || ||||| ||||| ||||| || | | ||||||||| | || Sbjct 1873888 TAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGG 1873829 Query 33642 CACACCTTCTTTGTCGGCAAT-TTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | |||||| ||||| ||| || || || |||| ||| | ||||| |||||| Sbjct 1873828 AATACCTTCCTTGTCTTGAATCTTACTCTT--GACATTGTCAATAGTGTCTGATGATTCA 1873771 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| |||||||| || || || || || || || |||||| Sbjct 1873770 ACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCATA 1873720 Score = 127 bits (140), Expect = 1e-24 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||||||||||||||||| || || ||||| || ||||| || || Sbjct 1874176 ACCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGA 1874117 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| || ||||| ||||| ||||| || | | ||||||||| | || Sbjct 1874116 TAGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGG 1874057 Query 33642 CACACCTTCTTTGTCGGCAAT-TTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | |||||| ||||| ||| || || || |||| ||| | ||||| |||||| Sbjct 1874056 AATACCTTCCTTGTCTTGAATCTTACTCTT--GACATTGTCAATAGTGTCTGATGATTCA 1873999 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| |||||||| || || || || || || || |||||| Sbjct 1873998 ACTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCATA 1873948 Score = 114 bits (126), Expect = 8e-21 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||| ||||| ||| ||||| |||||||| || || Sbjct 1632692 ACCACCACGGAGACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 1632751 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | |||| || ||||| || || ||||| ||||||||||| |||||| | || Sbjct 1632752 CAAAGTTCTTCCGTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGG 1632811 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || ||| |||| ||| | |||||| ||||| | Sbjct 1632812 AATTCCTTCCTTGTCTTGAATCTT-GCTTTTGACATTGTCAATAGTGTCGGAAGATTCAA 1632870 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | || | || || || ||||| ||||| || || ||||| Sbjct 1632871 CTTCCAAGGTAATAGTCTTACCAGTTAAGGTCTTAACAAA 1632910 >seq4 Length=1903616 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | |||||| |||||||| || || || ||||| |||||||| || | Sbjct 1735256 CACCACCACGGAGACGTAAGACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAG 1735315 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || || | | | || ||||| || || || ||||| |||||||| || |||||| | | Sbjct 1735316 AAAGGGTTCTTCCATCTTCCAACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAG 1735375 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| ||| || | | |||| ||| | |||||| || || Sbjct 1735376 GAATTCCTTCTTTGTCTTGAATCTT-AGACTTGACATTGTCAATGGTGTCTGAAGACTCA 1735434 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || ||||| || | || || || || || ||||| Sbjct 1735435 ACCTCGAGAGTAATAGTCTTACCCGTAAGGGTCTTAACGAAAATTTGCAT 1735484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703939908800