Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 >seq1 Length=2480924 Score = 107 bits (118), Expect = 2e-18 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| |||||||| | ||| |||||||||||||||||| || | | Sbjct 1632693 CCACCACGGAGACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 1632752 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| |||| || | |||||||| ||||| ||||| ||||| || || | ||| Sbjct 1632753 AAAGTTCTTCCGTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGA 1632812 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGA-GTTG-CCACCGTGTCGCTCGATTCCA 35687 | | ||||||| | ||| | |||||| || ||| | | |||||| ||||| | Sbjct 1632813 ATTCCTTCCTTGT-CTTGA-ATCTTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCAA 1632870 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAA 35727 | |||| || || || ||||| || || || || ||||| Sbjct 1632871 CTTCCAAGGTAATAGTCTTACCAGTTAAGGTCTTAACAAA 1632910 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 35525 AACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCG 35584 |||||||||||||| || ||||||||||| ||||| || | | ||||| |||| Sbjct 1873476 AACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCT 1873417 Query 35585 TCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 || | ||||| || ||||| || | | ||||| || | |||| | |||||||| Sbjct 1873416 TCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCT 1873357 Query 35645 ATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTT 35704 ||||| ||| | | | | | ||||| ||||| || || | ||||| ||| Sbjct 1873356 TGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTT 1873297 Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| || || ||||| |||||||| Sbjct 1873296 TTACCAGTCAAGGTCTTAACAAAGATCTGCAT 1873265 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 35525 AACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCG 35584 |||||||||||||| || ||||||||||| ||||| || | | ||||| |||| Sbjct 1873704 AACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCT 1873645 Query 35585 TCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 || | ||||| || ||||| || | | ||||| || | |||| | |||||||| Sbjct 1873644 TCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCT 1873585 Query 35645 ATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTT 35704 ||||| ||| | | | | | ||||| ||||| || || | ||||| ||| Sbjct 1873584 TGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTT 1873525 Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| || ||||| || || ||||| Sbjct 1873524 TTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 35525 AACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCG 35584 |||||||||||||| || ||||||||||| ||||| || | | ||||| |||| Sbjct 1873932 AACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCT 1873873 Query 35585 TCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 || | ||||| || ||||| || | | ||||| || | |||| | |||||||| Sbjct 1873872 TCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCT 1873813 Query 35645 ATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTT 35704 ||||| ||| | | | | | ||||| ||||| || || | ||||| ||| Sbjct 1873812 TGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTT 1873753 Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| || ||||| || || ||||| Sbjct 1873752 TTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 35525 AACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCG 35584 |||||||||||||| || ||||||||||| ||||| || | | ||||| |||| Sbjct 1874160 AACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCT 1874101 Query 35585 TCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 || | ||||| || ||||| || | | ||||| || | |||| | |||||||| Sbjct 1874100 TCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCT 1874041 Query 35645 ATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTT 35704 ||||| ||| | | | | | ||||| ||||| || || | ||||| ||| Sbjct 1874040 TGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTT 1873981 Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| || ||||| || || ||||| Sbjct 1873980 TTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793515476200