Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 208 6e-49 seq10 96.9 3e-15 >seq2 Length=2234776 Score = 208 bits (230), Expect = 6e-49 Identities = 419/607 (69%), Gaps = 26/607 (4%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || ||||| | || |||||| |||||||||| || ||||||||||| || ||||| | Sbjct 2160690 AGATTTGTTCTTTTCCCAATTAAATATCATGAAATCTGGCAAATGTATAAGAAAGCTGAA 2160749 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCAC-ATTGG--ATT 43813 || || || ||||| |||||||| |||| || | |||| | || ||||| | Sbjct 2160750 GCTTCCTTCTGGACTGCAGAAGAGATTGACTT-AGGAAAGGATGTTCATGATTGGGAAAA 2160808 Query 43814 GCATTAAAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAG 43872 | || || |||| |||| | |||||| || || || || || |||||||| Sbjct 2160809 CCGTTTGAATGACAATGAAAGATTTTTTATTTCAAGAGTCTTAGCTTTCTTTGCTGCATC 2160868 Query 43873 CGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA--GAAGTTCAATTACCA 43930 || || || || ||||||||||| || || || | || ||||||||| | || Sbjct 2160869 TGATGGTATTGTTAATGAAAATTTAGT-AGAAAACTT-CTCAGCTGAAGTTCAACTTCCT 2160926 Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 ||||| || || ||||| || ||||| || ||||| || || || |||| ||| Sbjct 2160927 GAAGCCAAGTGCTTCTATGGTTTCCAAATCATGATGGAAAACATCCACTCTGAAACTTAC 2160986 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA--GAAGCATCGATTGTTTA--- 44045 | ||||| ||||| || ||||| || ||| | |||||| |||| |||| Sbjct 2160987 TCCTTACTGATTGATACTTATATCAAGGA----CACAAAGGAAGCA--GATTATTTATTC 2161040 Query 44046 -ATGCGATAGAAA-CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT 44103 |||| || |||| || | | ||| || ||||| || || || ||||| | |||||| Sbjct 2161041 AATGCTATTGAAAACATTCCATGC-ATCAAACAAAAGGCTGAATGGGCTTTACGATGGAT 2161099 Query 44104 AAATTCAAATGATTCTTT---TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCAT 44160 ||| |||| | || ||| ||| || | || || ||||| | ||| ||||| || Sbjct 2161100 CAATGACGATGAAGCATTGTTTGGTGAAAGATTAGTTGCCTTTGCTGCTGTTGAAGGTAT 2161159 Query 44161 TTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGG 44220 |||||| || || |||||||| | || || ||| | ||||| ||||||| |||||||| Sbjct 2161160 TTTCTTCTCGGGCTCGTTTGCTTCTATCTTCTGGCTCAAGAAGAGAGGTTTAATGCCTGG 2161219 Query 44221 GTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 | || || || || || || || | | |||||||| |||||| || |||||||| Sbjct 2161220 TCTCACATTCTCTAACGAATTGATCTGCAGAGATGAAGGTTTACATACTGACTTTGCTTG 2161279 Query 44281 CTTGTTA 44287 ||||||| Sbjct 2161280 CTTGTTA 2161286 >seq10 Length=505680 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 115035 GTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTCGGCT 115094 |||||||| ||||||| ||| |||||||| || || | ||||||||||| || |||||| Sbjct 238939 GTCATACGAGAAGGAATAGCGTGCGGATTGATGATTAGATCTGGCACTAATCCTTCGGCT 238880 Query 115095 GTGAACGGCATGTCGTGCTGATCGTACATCATTCCACAAGTTCCTTTTTGAGCGGTAAAC 115154 ||||| ||||| || | | ||| | || || ||| ||||| ||| || | | Sbjct 238879 GTGAATGGCATATCTTCGTTCCTATACGTAATACCGATAGTACCTTTCTGACCGTGACGC 238820 Query 115155 GATGCAAATTTATCACCAATCTCAGGTTCTCTGATTTTTCTCA 115197 || ||||| ||||||||||| | || | || || |||||| Sbjct 238819 GAAGCAAACTTATCACCAATTTGGGGAACCTTGGTTGTTCTCA 238777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455927340075