Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 102 7e-17 seq11 82.4 6e-11 seq5 82.4 6e-11 >seq1 Length=2480924 Score = 102 bits (112), Expect = 7e-17 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTC 27091 || || ||||||||||| || || || ||||||||||||||||| | | ||| || | Sbjct 1873707 CGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTT-CGTCC 1873649 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 |||||| | || || || || | ||||| | || ||||| || || | ||| || || Sbjct 1873648 GTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTT 1873589 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 || ||||| | || | | || | |||||||| | ||||||||||| || || Sbjct 1873588 GTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGAT 1873529 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || |||| || ||||| || ||||||||| Sbjct 1873528 GGTTTTACCAGTCAARGTCTTCACGAAAATTTGCATA 1873492 Score = 102 bits (112), Expect = 7e-17 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTC 27091 || || ||||||||||| || || || ||||||||||||||||| | | ||| || | Sbjct 1873935 CGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTT-CGTCC 1873877 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 |||||| | || || || || | ||||| | || ||||| || || | ||| || || Sbjct 1873876 GTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTT 1873817 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 || ||||| | || | | || | |||||||| | ||||||||||| || || Sbjct 1873816 GTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGAT 1873757 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || |||| || ||||| || ||||||||| Sbjct 1873756 GGTTTTACCAGTCAARGTCTTCACGAAAATTTGCATA 1873720 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTC 27091 || || ||||||||||| || || || ||||||||||||||||| | | ||| || | Sbjct 1874163 CGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTT-CGTCC 1874105 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 |||||| | || || || || | ||||| | || ||||| || || | ||| || || Sbjct 1874104 GTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTT 1874045 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 || ||||| | || | | || | |||||||| | ||||||||||| || || Sbjct 1874044 GTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGAT 1873985 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || |||| || ||||| || ||||||||| Sbjct 1873984 GGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCATA 1873948 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTC 27091 || || ||||||||||| || || || ||||||||||||||||| | | ||| || | Sbjct 1873479 CGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTT-CGTCC 1873421 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 |||||| | || || || || | ||||| | || ||||| || || | ||| || || Sbjct 1873420 GTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTT 1873361 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 || ||||| | || | | || | |||||||| | ||||||||||| || || Sbjct 1873360 GTCTTGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGAT 1873301 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| || || |||||||| ||||| Sbjct 1873300 GGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCAT 1873265 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| |||||||| | ||||| || |||||||| |||||||| || | | || Sbjct 1632705 CGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTTCCG 1632764 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | || ||||| || | || | |||||||||||| || || | || || || Sbjct 1632765 TCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTG 1632824 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| |||| | | || | |||||| | | ||||||||| | || ||| Sbjct 1632825 TCTTGAATCTTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCAACTTCCAAGGTAATA 1632884 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAA 27238 | || || || | || || ||||| Sbjct 1632885 GTCTTACCAGTTAAGGTCTTAACAAA 1632910 >seq11 Length=408711 Score = 82.4 bits (90), Expect = 6e-11 Identities = 210/314 (67%), Gaps = 13/314 (4%) Strand=Plus/Plus Query 131644 TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTT 131703 ||||||| ||||||||| | || || | |||||| || || || || || | |||| | Sbjct 180836 TTCAACTTTCTTCATAAATAGGTCGGGTATCCATAATGCATAGAAGAGGTCACGAGCTCT 180895 Query 131704 TTTCTCTTCTGTACCCATAAtttttttCAAATTTAAA-AAGTCCAAAATGTCCGCATGCC 131762 | ||||||| |||| || ||||||| || | || || || || || || ||||| Sbjct 180896 TAACTCTTCTTTACC-ATGATTTTTTCTTAAGTCAAGGAATTCGAATATATCATTATGCC 180954 Query 131763 AGGGTTCCAAATACACTGCCATTGCGCC------TTTGCGCTTACCGCCTTGATTAACAT 131816 | ||||| | || | ||| | ||||| |||| || || ||||||| ||| | Sbjct 180955 ATGGTTCAAGGTATATTGCAAAAGCGCCCGGTCTTTTG---TTTCCCCCTTGATCAACGT 181011 Query 131817 GACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATT-G 131875 | | | |||| ||| | || ||||||||||| | || || || | | | || || | Sbjct 181012 ATCTAGCAGTGTTATTGAAAACTCGCAACATGGGAACTAACCCATTCGAGGTACCGTTAG 181071 Query 131876 GTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCG 131935 | ||||| |||||| || | | ||| || || ||||| | | || || || || Sbjct 181072 TTCCTCTT-ATGTAGGAACCTCTAGATCTAATATTATGAACACTTAAGCCTATTCCACCA 181130 Query 131936 CCGTATTTAGAGAT 131949 || | || ||||| Sbjct 181131 GCGAACTTGGAGAT 181144 >seq5 Length=1485630 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/221 (68%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 130753 ATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGG 130812 ||||| |||||||| |||||||||| || | |||| ||| || || || | || Sbjct 767292 ATTAACAATTTGAAATTCACCAGCCAAAACTCTTCTAGAGTAGATATTAGAAGTATATGG 767233 Query 130813 TTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCAC 130872 ||| || |||| ||| || | ||||| | |||| ||| || ||||| || || Sbjct 767232 TTCGAAACATTCATTGAAACCAAGAATTTGAGAAGTAGATGCAGTTGGCATAGGAGCAAC 767173 Query 130873 TAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCA 130932 ||| ||||| || | || || ||| | | | || || |||||| |||||||||||| Sbjct 767172 TAAAAGAGAGTTTCTAATTCCATGCTTAGCAACTTGTCTCTTCAAAGAATCCCAATCCCA 767113 Query 130933 TAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTA 130973 || | || ||||| | | ||| | ||||||||||| Sbjct 767112 TAAATCAGTTGGTTT---AATACCCCAAAGATCAAATTGTA 767075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934322316680