Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq4 185 1e-41
seq1 127 2e-24
seq2 82.4 9e-11
>seq4
Length=1903616
Score = 185 bits (204), Expect = 1e-41
Identities = 179/230 (78%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| |||||||| || || ||||| ||||| || |||||||||||||| |||||||||||
Sbjct 1735487 ATCATGCAAATTTTCGTTAAGACCCTTACGGGTAAGACTATTACTCTCGAGGTTGAGTCT 1735428
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||||| ||| | ||| |||| ||||| ||||| || ||||||||||||||
Sbjct 1735427 TCAGACACCATTGACAATGTCAAGTCTAAGATTCAAGACAAAGAAGGAATTCCTCCAGAT 1735368
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|| || ||| | || |||||||||||||| | || |||| | ||||| | |||||
Sbjct 1735367 CAACAACGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGAAGAACCCTTTCTGACTAC 1735308
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||||||||||||| || || ||| | ||||| ||||| || |||||
Sbjct 1735307 AACATCCAAAAGGAATCGACCCTCCATTTGGTCTTACGTCTCCGTGGTGG 1735258
>seq1
Length=2480924
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
||||| ||||| | || || ||||||||||| | || ||||| || || | |||
Sbjct 1632910 TTTGTTAAGACCTTAACTGGTAAGACTATTACCTTGGAAGTTGAATCTTCCGACACTATT 1632851
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | || || ||||| |||||||| |||||||| ||||| || |||||| |
Sbjct 1632850 GACAATGTCAAAAGCAAGATTCAAGACAAGGAAGGAATTCCACCAGATCAACAGCGTTTG 1632791
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| ||||||||||||||| | || || | | || | | ||||| || | ||||||
Sbjct 1632790 ATCTTTGCTGGTAAGCAATTAGAAGACGGAAGAACTTTGTCTGACTACAACATTCAAAAG 1632731
Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || ||||| ||| | ||||||||||| || |||||
Sbjct 1632730 GAGTCTACTCTCCATTTGGTCTTGCGTCTCCGTGGTGG 1632693
Score = 125 bits (138), Expect = 8e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| | || || || || || || | || ||||| |||
Sbjct 1873265 ATGCAGATCTTTGTTAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873324
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||| ||| ||||| |||||||| || ||||| ||||| |||
Sbjct 1873325 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873384
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | || || |||||||| |||||| | || || | || || ||| | ||||| |||
Sbjct 1873385 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873444
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||||||||| || | ||| | || || ||||| | |||||
Sbjct 1873445 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873491
Score = 125 bits (138), Expect = 8e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || ||||| | || || || || || || | || ||||| |||
Sbjct 1873949 ATGCAAATTTTCGTGAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1874008
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||| ||| ||||| |||||||| || ||||| ||||| |||
Sbjct 1874009 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1874068
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | || || |||||||| |||||| | || || | || || ||| | ||||| |||
Sbjct 1874069 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1874128
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||||||||| || | ||| | || || |||||| | |||||
Sbjct 1874129 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTTAGAGGTGG 1874175
Score = 122 bits (134), Expect = 1e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || ||||| | || || || || || || | || ||||| |||
Sbjct 1873493 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873552
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||| ||| ||||| |||||||| || ||||| ||||| |||
Sbjct 1873553 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873612
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | || || |||||||| |||||| | || || | || || ||| | ||||| |||
Sbjct 1873613 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873672
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||||||||| || | ||| | || || ||||| | |||||
Sbjct 1873673 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873719
Score = 122 bits (134), Expect = 1e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || ||||| | || || || || || || | || ||||| |||
Sbjct 1873721 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873780
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||| ||| ||||| |||||||| || ||||| ||||| |||
Sbjct 1873781 GACACTATTGACAATGTCAAGAGTAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAG 1873840
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | || || |||||||| |||||| | || || | || || ||| | ||||| |||
Sbjct 1873841 CAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAAT 1873900
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||||||||| || | ||| | || || ||||| | |||||
Sbjct 1873901 ATTCAAAAGGAATCAACATTACATTTGGTGTTACGTCTAAGAGGTGG 1873947
>seq2
Length=2234776
Score = 82.4 bits (90), Expect = 9e-11
Identities = 124/174 (71%), Gaps = 3/174 (2%)
Strand=Plus/Plus
Query 64664 AAAAGGCTGAATGGGCCATCCGGTGGATGAAT--CG-TGGGTCGTCGTTTGGTCAGCGTC 64720
|||||||||||||||| | || ||||| ||| || || | | ||||||| | |
Sbjct 2161072 AAAAGGCTGAATGGGCTTTACGATGGATCAATGACGATGAAGCATTGTTTGGTGAAAGAT 2161131
Query 64721 TCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCT 64780
| | || ||||| ||| ||||| |||||||| || || || || |||||| ||||
Sbjct 2161132 TAGTTGCCTTTGCTGCTGTTGAAGGTATTTTCTTCTCGGGCTCGTTTGCTTCTATCTTCT 2161191
Query 64781 GGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834
|||| || ||| | || | ||||| ||||| | || || ||||| ||||||
Sbjct 2161192 GGCTCAAGAAGAGAGGTTTAATGCCTGGTCTCACATTCTCTAACGAATTGATCT 2161245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310293066800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |