Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1 131 1e-25 seq4 95.1 8e-15 >seq1 Length=2480924 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||||||||||||| ||||||||||||||| || || || | |||| Sbjct 1632702 AGACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTT 1632761 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | ||| ||||| ||||| || ||||||||||| || || || | ||| ||| Sbjct 1632762 CCGTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCC 1632821 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || |||| || | ||| ||||| || ||||||| ||| Sbjct 1632822 TTGTCT-TGAATCTTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCAACTTCCAAGGT 1632880 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAA 34698 || || ||||| ||||| || || |||||| Sbjct 1632881 AATAGTCTTACCAGTTAAGGTCTTAACAAAA 1632911 Score = 102 bits (112), Expect = 5e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| ||||||||||| | || ||||||||||| || || || || Sbjct 1873491 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1873432 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| ||||||| | ||| || || ||||| || | | || || || || || Sbjct 1873431 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1873372 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| || | || || | ||| |||||| || || Sbjct 1873371 ATACCTTCCTTGTCT-TGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873313 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 ||| | || || |||||||| || || || || ||||| ||||||||||||| Sbjct 1873312 TTCTAATGTGATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCATGTTGA 1873260 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||||||||| ||||||||||| | || ||||||||||| || || || || Sbjct 1874175 CCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1874116 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| ||||||| | ||| || || ||||| || | | || || || || || Sbjct 1874115 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1874056 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| || | || || | ||| |||||| || || Sbjct 1874055 ATACCTTCCTTGTCT-TGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873997 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || |||||||| || || || ||||| ||||| ||||| Sbjct 1873996 TTCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| ||||||||||| | || ||||||||||| || || || || Sbjct 1873719 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1873660 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| ||||||| | ||| || || ||||| || | | || || || || || Sbjct 1873659 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1873600 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| || | || || | ||| |||||| || || Sbjct 1873599 ATACCTTCCTTGTCT-TGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873541 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || |||||||| || || || ||||| ||||| ||||| Sbjct 1873540 TTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| ||||||||||| | || ||||||||||| || || || || Sbjct 1873947 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1873888 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| ||||||| | ||| || || ||||| || | | || || || || || Sbjct 1873887 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1873828 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| || | || || | ||| |||||| || || Sbjct 1873827 ATACCTTCCTTGTCT-TGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873769 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || |||||||| || || || ||||| ||||| ||||| Sbjct 1873768 TTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721 >seq4 Length=1903616 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| || ||||||||||| || |||||||| ||||| || || ||||| |||| Sbjct 1735267 AGACGTAAGACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTT 1735326 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || ||||| ||||| || ||||| ||||| || || || | ||| || Sbjct 1735327 CCATCTTCCAACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCT 1735386 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || | || || | ||| |||||| ||| || || | || Sbjct 1735387 TTGTCT-TGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGT 1735445 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG-TTGAT 34712 || || ||||| || | || || || ||||| |||||| ||||| Sbjct 1735446 AATAGTCTTACCCGTAAGGGTCTTAACGAAAATTTGCATGATTGAT 1735491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729542463495