Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq1 131 1e-25
seq4 95.1 8e-15
>seq1
Length=2480924
Score = 131 bits (144), Expect = 1e-25
Identities = 157/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||| |||||||||||||| ||||||||||||||| || || || | ||||
Sbjct 1632702 AGACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTT 1632761
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| | ||| ||||| ||||| || ||||||||||| || || || | ||| |||
Sbjct 1632762 CCGTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCC 1632821
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| || |||| || | ||| ||||| || ||||||| |||
Sbjct 1632822 TTGTCT-TGAATCTTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCAACTTCCAAGGT 1632880
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAA 34698
|| || ||||| ||||| || || ||||||
Sbjct 1632881 AATAGTCTTACCAGTTAAGGTCTTAACAAAA 1632911
Score = 102 bits (112), Expect = 5e-17
Identities = 164/233 (70%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| ||||||||||| | || ||||||||||| || || || ||
Sbjct 1873491 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1873432
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| ||||| ||||||| | ||| || || ||||| || | | || || || || ||
Sbjct 1873431 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1873372
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| || ||||||||| ||| || | || || | ||| |||||| || ||
Sbjct 1873371 ATACCTTCCTTGTCT-TGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873313
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711
||| | || || |||||||| || || || || ||||| |||||||||||||
Sbjct 1873312 TTCTAATGTGATGGTTTTACCAGTCAAGGTCTTAACAAAGATCTGCATGTTGA 1873260
Score = 98.7 bits (108), Expect = 6e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||||||||| ||||||||||| | || ||||||||||| || || || ||
Sbjct 1874175 CCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1874116
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| ||||| ||||||| | ||| || || ||||| || | | || || || || ||
Sbjct 1874115 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1874056
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| || ||||||||| ||| || | || || | ||| |||||| || ||
Sbjct 1874055 ATACCTTCCTTGTCT-TGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873997
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| | || || |||||||| || || || ||||| ||||| |||||
Sbjct 1873996 TTCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| ||||||||||| | || ||||||||||| || || || ||
Sbjct 1873719 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1873660
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| ||||| ||||||| | ||| || || ||||| || | | || || || || ||
Sbjct 1873659 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1873600
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| || ||||||||| ||| || | || || | ||| |||||| || ||
Sbjct 1873599 ATACCTTCCTTGTCT-TGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873541
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| | || || |||||||| || || || ||||| ||||| |||||
Sbjct 1873540 TTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| ||||||||||| | || ||||||||||| || || || ||
Sbjct 1873947 CCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1873888
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| ||||| ||||||| | ||| || || ||||| || | | || || || || ||
Sbjct 1873887 AGAGTTCGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTGGA 1873828
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| || ||||||||| ||| || | || || | ||| |||||| || ||
Sbjct 1873827 ATACCTTCCTTGTCT-TGAATCTTACTCTTGACATTGTCAATAGTGTCTGATGATTCAAC 1873769
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| | || || |||||||| || || || ||||| ||||| |||||
Sbjct 1873768 TTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721
>seq4
Length=1903616
Score = 95.1 bits (104), Expect = 8e-15
Identities = 159/226 (70%), Gaps = 3/226 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| || ||||||||||| || |||||||| ||||| || || ||||| ||||
Sbjct 1735267 AGACGTAAGACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTT 1735326
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| | || ||||| ||||| || ||||| ||||| || || || | ||| ||
Sbjct 1735327 CCATCTTCCAACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCT 1735386
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| || | || || | ||| |||||| ||| || || | ||
Sbjct 1735387 TTGTCT-TGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGT 1735445
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG-TTGAT 34712
|| || ||||| || | || || || ||||| |||||| |||||
Sbjct 1735446 AATAGTCTTACCCGTAAGGGTCTTAACGAAAATTTGCATGATTGAT 1735491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314729542463495
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |