Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq4 122 6e-23 >seq1 Length=2480924 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || ||||| ||| | || || ||||| ||||| | |||||||| || Sbjct 1873262 AACATGCAGATCTTTGTTAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCA 1873321 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| |||| ||| | || | || | || ||||| |||||| | || ||||| Sbjct 1873322 TCAGACACTATTGACAATGTCAAGAGTAAGA-TTCAAGACAAGGAAGGTATTCCACCAGA 1873380 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || | | || ||||| || || ||| | ||||||| ||| ||| || || || Sbjct 1873381 TCAGCAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTA 1873440 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 ||| || ||||| || || ||||||||||| || ||| Sbjct 1873441 CAATATTCAAAAGGAATCAACATTACATTTGGTGTTA 1873477 Score = 122 bits (134), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||| | || || ||||| ||||| | |||||||| || | Sbjct 1873949 ATGCAAATTTTCGTGAAGACCTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1874008 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || | || ||||| |||||| | || |||||||| Sbjct 1874009 GACACTATTGACAATGTCAAGAGTAAGA-TTCAAGACAAGGAAGGTATTCCACCAGATCA 1874067 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| || || ||| | ||||||| ||| ||| || || ||||| Sbjct 1874068 GCAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAA 1874127 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || ||||| || || ||||||||||| || ||| Sbjct 1874128 TATTCAAAAGGAATCAACATTACATTTGGTGTTA 1874161 Score = 120 bits (132), Expect = 2e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || | || || ||||| ||||| | |||||||| || | Sbjct 1873493 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873552 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || | || ||||| |||||| | || |||||||| Sbjct 1873553 GACACTATTGACAATGTCAAGAGTAAGA-TTCAAGACAAGGAAGGTATTCCACCAGATCA 1873611 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| || || ||| | ||||||| ||| ||| || || ||||| Sbjct 1873612 GCAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAA 1873671 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || ||||| || || ||||||||||| || ||| Sbjct 1873672 TATTCAAAAGGAATCAACATTACATTTGGTGTTA 1873705 Score = 120 bits (132), Expect = 2e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || | || || ||||| ||||| | |||||||| || | Sbjct 1873721 ATGCAAATTTTCGTGAAGACYTTGACTGGTAAAACCATCACATTAGAAGTTGAATCATCA 1873780 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || | || ||||| |||||| | || |||||||| Sbjct 1873781 GACACTATTGACAATGTCAAGAGTAAGA-TTCAAGACAAGGAAGGTATTCCACCAGATCA 1873839 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| || || ||| | ||||||| ||| ||| || || ||||| Sbjct 1873840 GCAAAGACTCATCTTTGCTGGAAAGCAATTAGAAGACGGACGAACTCTATCGGACTACAA 1873899 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || ||||| || || ||||||||||| || ||| Sbjct 1873900 TATTCAAAAGGAATCAACATTACATTTGGTGTTA 1873933 Score = 114 bits (126), Expect = 9e-21 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 23619 TTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGT 23678 ||| ||||| ||| | || || || || || || | |||||||| || | |||||| | Sbjct 1632911 TTTTGTTAAGACCTTAACTGGTAAGACTATTACCTTGGAAGTTGAATCTTCCGACACTAT 1632852 Query 23679 TGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTT 23737 ||| ||| | |||| || | || ||||| ||||| | || |||||||||||||||| Sbjct 1632851 TGACAATGTCAAAAGCAAGA-TTCAAGACAAGGAAGGAATTCCACCAGATCAACAGCGTT 1632793 Query 23738 TAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAA 23797 | || ||||| || || ||| | ||||||| | | ||||| || |||||||| |||| Sbjct 1632792 TGATCTTTGCTGGTAAGCAATTAGAAGACGGAAGAACTTTGTCTGACTACAACATTCAAA 1632733 Query 23798 AAGAGTCCACATTACATTTAGTTTT 23822 | ||||| || | ||||| || || Sbjct 1632732 AGGAGTCTACTCTCCATTTGGTCTT 1632708 >seq4 Length=1903616 Score = 122 bits (134), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| ||||| ||||| || || || |||||||| ||||| || | Sbjct 1735484 ATGCAAATTTTCGTTAAGACCCTTACGGGTAAGACTATTACTCTCGAGGTTGAGTCTTCA 1735425 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || ||||||||||| | || |||||||| Sbjct 1735424 GACACCATTGACAATGTCAAGTCTAAGA-TTCAAGACAAAGAAGGAATTCCTCCAGATCA 1735366 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || || || ||||||| | | | || | || ||||| Sbjct 1735365 ACAACGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGAAGAACCCTTTCTGACTACAA 1735306 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 ||| ||||| || || || | ||||| || ||| Sbjct 1735305 CATCCAAAAGGAATCGACCCTCCATTTGGTCTTA 1735272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009538207620