Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 145 2e-29 seq4 132 1e-25 >seq1 Length=2480924 Score = 145 bits (160), Expect = 2e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||| | |||||| || | | ||||| || ||||||| ||||| ||| Sbjct 1873689 GTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCA 1873630 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| |||| ||| || || || |||||||||||||||||||| ||||| ||| Sbjct 1873629 GCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTG 1873570 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| || || |||||||| | ||| || ||||| ||||| || || || ||||| || Sbjct 1873569 ACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAARGTC 1873510 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 1873509 TTCACGAAAATTTGCAT 1873493 Score = 145 bits (160), Expect = 2e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||| | |||||| || | | ||||| || ||||||| ||||| ||| Sbjct 1873917 GTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCA 1873858 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| |||| ||| || || || |||||||||||||||||||| ||||| ||| Sbjct 1873857 GCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTG 1873798 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| || || |||||||| | ||| || ||||| ||||| || || || ||||| || Sbjct 1873797 ACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAARGTC 1873738 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 1873737 TTCACGAAAATTTGCAT 1873721 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||| | |||||| || | | ||||| || ||||||| ||||| ||| Sbjct 1874145 GTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCA 1874086 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| |||| ||| || || || |||||||||||||||||||| ||||| ||| Sbjct 1874085 GCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTG 1874026 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| || || |||||||| | ||| || ||||| ||||| || || || ||||| || Sbjct 1874025 ACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAAGGTC 1873966 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 1873965 TTCACGAAAATTTGCAT 1873949 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||| | |||||| || | | ||||| || ||||||| ||||| ||| Sbjct 1873461 GTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTTCCA 1873402 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| |||| ||| || || || |||||||||||||||||||| ||||| ||| Sbjct 1873401 GCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTG 1873342 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| || || |||||||| | ||| || ||||| ||||| || || || ||||| || Sbjct 1873341 ACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAAGGTC 1873282 Query 225697 TTTATGAACACTTGCATTTT 225716 || | || | ||||| || Sbjct 1873281 TTAACAAAGATCTGCATGTT 1873262 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || ||| | |||||||| || || ||||| | ||||| || | |||||| Sbjct 1632698 ACGGAGACGCAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 1632757 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| || ||||||| ||||| ||||| ||||| | || ||||| || || ||||| || Sbjct 1632758 TCTTCCGTCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCC 1632817 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| || ||| || || ||||| || | ||| || || || Sbjct 1632818 TTCCTTGTCTTGAATCTTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCAACTTCCAA 1632877 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || ||||| || || || || || Sbjct 1632878 GGTAATAGTCTTACCAGTTAAGGTCTT 1632904 Score = 104 bits (114), Expect = 6e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || || ||||| ||||| ||||||||||| |||||||| Sbjct 1309457 GAAAATTTGACCATCAGTAATGGAAATGACATTGGTAGGAATATAAGCAGAGACATCACC 1309516 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||| ||||| | |||||||| || || | ||| || ||||| Sbjct 1309517 ACCTTGAGTTTCAATGACAGGTAAAGCAGTCAATGAACCGCCACC 1309561 >seq4 Length=1903616 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| || ||||| ||||||| ||||| || | | ||||| |||||||| | |||| Sbjct 1735282 TGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCATCTTCCAACTGC 1735341 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| | |||||||| || || ||||| ||||| |||||||| ||||| Sbjct 1735342 TTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTA 1735401 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| || ||||||||||| | || || || | || || ||||| ||||| Sbjct 1735402 GACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATAGTCTTACCCGTA 1735461 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | |||||| Sbjct 1735462 AGGGTCTTAACGAAAATTTGCAT 1735484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530970810410