Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 309 3e-79 >seq2 Length=2234776 Score = 309 bits (342), Expect = 3e-79 Identities = 616/905 (68%), Gaps = 13/905 (1%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||||||| ||||| || || || |||| ||||||||||||||||||||| || | || Sbjct 2161580 AACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCGAAGAAATTAGTTTTACCAGCCAA 2161521 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAA---TGTTTTTCACACTT 4363 || ||||||||||| || ||||| ||||| | | ||||||| | || | | | Sbjct 2161520 AGAGATATTTTCCATGAAGTCAAATGGATTGGAAGAGTTGTAAACCTTCTTGTTGCCC-- 2161463 Query 4364 TAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTT 4423 | ||| | ||| |||| || || |||||||| | |||||| | |||||| | |||||| Sbjct 2161462 -AAAGCAAGAAGTAATCTATCTGCAACAAATTCAACATACTGACACATGAGCTTGCAGTT 2161404 Query 4424 AATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGC 4483 || || | ||| ||||| | || | || || | | | ||| || || || Sbjct 2161403 CATACCTAATAAAGAGACAGGCAAAGCATCGGTGAAGTAGCCCTTTTCGATTTCGACAGC 2161344 Query 4484 TTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAA 4543 ||| || || || | || | || | ||| | || || | || || Sbjct 2161343 TTCAGTAATGATCTTTTCAACAATAACAGCGTCAGGTCTGTTGTTCAAATGAGAGAATAA 2161284 Query 4544 TAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGT 4603 || || ||||| ||| ||| |||||||| ||||||| |||| ||||||||| || || Sbjct 2161283 CAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAGATCAATTCGTTAGAGAATGT 2161224 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 | || ||||||||||||||||| || ||||| || |||| ||||| || || || || Sbjct 2161223 GAGACCAGGCATTAAACCTCTCTTCTTGAGCCAGAAGATAGAAGCAAACGAGCCCGAGAA 2161164 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGA-GCTGGCTTTGT 4722 ||| || ||||| || || ||||| || ||||||| || ||| | ||| | | || Sbjct 2161163 GAAAATACCTTCAACAGCAGCAAAGGCAACTAATCTTTCACCAAACAATGCT-TCATCGT 2161105 Query 4723 CTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAG 4782 | || |||||| ||| ||||| | ||| |||| || | ||| ||||| | | |||| Sbjct 2161104 CATTGATCCATCGTAAAGCCCATTCAGCCTTTTGTTTGATGCATGGAATGTTTTCAATAG 2161045 Query 4783 CGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 | || ||||| | | | ||| || ||| | |||||||| || || |||| | | Sbjct 2161044 CATTGAATAAATAATCTGCTTCCTTTGTGTCCTTGATATAAGTATCAATCAGTAAGGAGT 2160985 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 | ||||||| || || ||||| || || || || || || ||||| | ||||| | Sbjct 2160984 AAGTTTCAGAGTGGATGTTTTCCATCATGATTTGGAAACCATAGAAGCACTTGGCTTCAG 2160925 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 | ||||||||| | || |||||||||| ||||| || || ||||| ||| | Sbjct 2160924 GAAGTTGAACTTCAGCTGAGAAGTTTTCTACTAAATTTTCATTAACAATACCATCAGATG 2160865 Query 4963 CTGCAAAAAACGCCAAAA--CATGAGATATAAAGTACTGT--TCGTCAGGCTTAAGTTTT 5018 | ||||| || || || | | ||| ||| ||| | || | | |||| | | | ||| Sbjct 2160864 CAGCAAAGAAAGCTAAGACTCTTGAAATAAAAAAT-CTTTCATTGTCATTCAAACGGTTT 2160806 Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078 | ||| | | | ||| || ||| |||| ||||| ||||||| || || ||||| Sbjct 2160805 TCCCAATCATGAACATCCTTTCCTAAGTCAATCTCTTCTGCAGTCCAGAAGGAAGCTTCA 2160746 Query 5079 GCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTG 5138 ||||| || ||||| ||| || ||| |||| | ||| || | | |||||||| || Sbjct 2160745 GCTTTCTTATACATTTGCCAGATTTCATGATATTTAATTGGGAAAAGAACAAATCTTTTA 2160686 Query 5139 TCGTT 5143 ||||| Sbjct 2160685 TCGTT 2160681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049521929995