Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4 109 1e-18 seq1 105 2e-17 >seq4 Length=1903616 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| || || || || |||||||||||||| || | | ||||| |||||||| Sbjct 1735275 GACCAAATGGAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCATCTTC 1735334 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | || || || ||||| | | || || || | | |||||||| || ||||| Sbjct 1735335 CAACTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTG 1735394 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || |||||| | || | | |||||||| ||| || || ||||||||||| || Sbjct 1735395 AATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATAGTCTT 1735454 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| ||||| | ||||| Sbjct 1735455 ACCCGTAAGGGTCTTAACGAAAATTTGCAT 1735484 >seq1 Length=2480924 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| ||||||||||| ||||| |||||||| || | |||||||| || ||||| Sbjct 1632710 GACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTTCCGTCTTC 1632769 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || || || || ||||| | | ||| || || | | ||||||||||| ||||| Sbjct 1632770 TAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTGTCTTG 1632829 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || ||||||| | || | |||| ||| || ||||| | |||||||| || Sbjct 1632830 AATCTTGCTTTTGACATTGTCAATAGTGTCGGAAGATTCAACTTCCAAGGTAATAGTCTT 1632889 Query 152075 GCCCGTGAGAGTCTTCACGAA 152095 || || | ||||| || || Sbjct 1632890 ACCAGTTAAGGTCTTAACAAA 1632910 Score = 89.7 bits (98), Expect = 1e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965 || || || ||||| || ||||| || | || ||||| || ||||||| ||||| | Sbjct 1873689 GTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTT--C 1873632 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | || ||||| || || ||||| || | | || |||||||| |||||||| || | Sbjct 1873631 CAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCT 1873572 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 ||||| | || | ||||||| || ||||| | || || ||||| || || | | Sbjct 1873571 TGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAARG 1873512 Query 152086 TCTTCACGAAGACCTGCAT 152104 |||||||||| | ||||| Sbjct 1873511 TCTTCACGAAAATTTGCAT 1873493 Score = 89.7 bits (98), Expect = 1e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965 || || || ||||| || ||||| || | || ||||| || ||||||| ||||| | Sbjct 1873917 GTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTT--C 1873860 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | || ||||| || || ||||| || | | || |||||||| |||||||| || | Sbjct 1873859 CAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCT 1873800 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 ||||| | || | ||||||| || ||||| | || || ||||| || || | | Sbjct 1873799 TGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAARG 1873740 Query 152086 TCTTCACGAAGACCTGCAT 152104 |||||||||| | ||||| Sbjct 1873739 TCTTCACGAAAATTTGCAT 1873721 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965 || || || ||||| || ||||| || | || ||||| || ||||||| ||||| | Sbjct 1874145 GTTGATTCCTTTTGAATATTGTAGTCCGATAGAGTTCGTCCGTCTTCTAATTGCTTT--C 1874088 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | || ||||| || || ||||| || | | || |||||||| |||||||| || | Sbjct 1874087 CAGCAAAGATGAGTCTTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCT 1874028 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 ||||| | || | ||||||| || ||||| | || || ||||| || || | | Sbjct 1874027 TGACATTGTCAATAGTGTCTGATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAAGG 1873968 Query 152086 TCTTCACGAAGACCTGCAT 152104 |||||||||| | ||||| Sbjct 1873967 TCTTCACGAAAATTTGCAT 1873949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820578250065