Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016-
03-01] 15 sequences; 16,411,463 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq4 125 5e-24
seq1 93.3 3e-14
>seq4
Length=1903616
Score = 125 bits (138), Expect = 5e-24
Identities = 149/198 (75%), Gaps = 8/198 (4%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAA 44204
||||||||||||||||| || | || || || | || |||| |||||| || ||||
Sbjct 1735294 TCCTTTTGGATGTTGTAGTCAGAAAG--GGTTCTTCCATCTTCCAACTGCTTACCAGCAA 1735351
Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAA 44262
|||||||||| || ||||||| ||| | ||||| || || ||||| ||| ||
Sbjct 1735352 AGATCAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTAGACTTGACAT 1735411
Query 44263 TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTT 44322
||| | |||||||| | || || ||||| | ||||| ||||| ||||| ||||||||
Sbjct 1735412 TGT--CAATGGTGTCTGAAGACTCAACCTCGAGAGTAATAGTCTTACCCGTAAGGGTCTT 1735469
Query 44323 CACGAAGATTTGCATGAT 44340
||||| |||||||||||
Sbjct 1735470 AACGAAAATTTGCATGAT 1735487
>seq1
Length=2480924
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/210 (71%), Gaps = 12/210 (6%)
Strand=Plus/Plus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCG 44182
||| |||| || || || ||||||||| |||||||| || | | ||| | ||
Sbjct 1632707 CAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTT--CTTCCG 1632764
Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242
|| || | ||||| || ||||||||||||||||| ||||||| || | ||||||||
Sbjct 1632765 TCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTG 1632824
Query 44243 TCCGTTATCTTCTGCTT----CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298
|| |||| ||||| || ||| | || ||||||| ||||| || |||| ||
Sbjct 1632825 TCTTGAATCT--TGCTTTTGACATTGT--CAATAGTGTCGGAAGATTCAACTTCCAAGGT 1632880
Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328
||| ||||| || || | |||||| || ||
Sbjct 1632881 AATAGTCTTACCAGTTAAGGTCTTAACAAA 1632910
Score = 87.8 bits (96), Expect = 1e-12
Identities = 164/238 (69%), Gaps = 8/238 (3%)
Strand=Plus/Minus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || ||||| || | ||||||| || | || |||||||| || |||||
Sbjct 1873726 TTGCATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTA 1873667
Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221
|| | ||||| || |||| || | ||||| || |||||||| | | ||||||
Sbjct 1873666 GTCCGATAGAGTT--CGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGA 1873609
Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGG 44279
|||| || | ||||||||| || ||||| ||| || ||| | || ||||| |
Sbjct 1873608 TCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGT--CAATAGTGTCTG 1873551
Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || || | || || || || || || | ||||||||||| ||||||||
Sbjct 1873550 ATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493
Score = 87.8 bits (96), Expect = 1e-12
Identities = 164/238 (69%), Gaps = 8/238 (3%)
Strand=Plus/Minus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || ||||| || | ||||||| || | || |||||||| || |||||
Sbjct 1873954 TTGCATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTA 1873895
Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221
|| | ||||| || |||| || | ||||| || |||||||| | | ||||||
Sbjct 1873894 GTCCGATAGAGTT--CGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGA 1873837
Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGG 44279
|||| || | ||||||||| || ||||| ||| || ||| | || ||||| |
Sbjct 1873836 TCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGT--CAATAGTGTCTG 1873779
Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || || | || || || || || || | ||||||||||| ||||||||
Sbjct 1873778 ATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721
Score = 86.0 bits (94), Expect = 5e-12
Identities = 160/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC- 44169
|| ||||| || | ||||||| || | || |||||||| || ||||| || |
Sbjct 1874175 CCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1874116
Query 44170 -GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228
||||| || |||| || | ||||| || |||||||| | | |||||||||| |
Sbjct 1874115 AGAGTT--CGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTG 1874058
Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTC 44286
| | ||||||||| || ||||| ||| || ||| | || ||||| | |||||
Sbjct 1874057 GAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGT--CAATAGTGTCTGATGATTC 1874000
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | || || || || || || | |||||||||||| ||||||||
Sbjct 1873999 AACTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990334189255
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |