Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4 125 5e-24 seq1 93.3 3e-14 >seq4 Length=1903616 Score = 125 bits (138), Expect = 5e-24 Identities = 149/198 (75%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAA 44204 ||||||||||||||||| || | || || || | || |||| |||||| || |||| Sbjct 1735294 TCCTTTTGGATGTTGTAGTCAGAAAG--GGTTCTTCCATCTTCCAACTGCTTACCAGCAA 1735351 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAA 44262 |||||||||| || ||||||| ||| | ||||| || || ||||| ||| || Sbjct 1735352 AGATCAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTAGACTTGACAT 1735411 Query 44263 TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTT 44322 ||| | |||||||| | || || ||||| | ||||| ||||| ||||| |||||||| Sbjct 1735412 TGT--CAATGGTGTCTGAAGACTCAACCTCGAGAGTAATAGTCTTACCCGTAAGGGTCTT 1735469 Query 44323 CACGAAGATTTGCATGAT 44340 ||||| ||||||||||| Sbjct 1735470 AACGAAAATTTGCATGAT 1735487 >seq1 Length=2480924 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/210 (71%), Gaps = 12/210 (6%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCG 44182 ||| |||| || || || ||||||||| |||||||| || | | ||| | || Sbjct 1632707 CAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTT--CTTCCG 1632764 Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || | ||||| || ||||||||||||||||| ||||||| || | |||||||| Sbjct 1632765 TCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTG 1632824 Query 44243 TCCGTTATCTTCTGCTT----CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 || |||| ||||| || ||| | || ||||||| ||||| || |||| || Sbjct 1632825 TCTTGAATCT--TGCTTTTGACATTGT--CAATAGTGTCGGAAGATTCAACTTCCAAGGT 1632880 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328 ||| ||||| || || | |||||| || || Sbjct 1632881 AATAGTCTTACCAGTTAAGGTCTTAACAAA 1632910 Score = 87.8 bits (96), Expect = 1e-12 Identities = 164/238 (69%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| || | ||||||| || | || |||||||| || ||||| Sbjct 1873726 TTGCATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTA 1873667 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| || |||| || | ||||| || |||||||| | | |||||| Sbjct 1873666 GTCCGATAGAGTT--CGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGA 1873609 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGG 44279 |||| || | ||||||||| || ||||| ||| || ||| | || ||||| | Sbjct 1873608 TCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGT--CAATAGTGTCTG 1873551 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || | || || || || || || | ||||||||||| |||||||| Sbjct 1873550 ATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873493 Score = 87.8 bits (96), Expect = 1e-12 Identities = 164/238 (69%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| || | ||||||| || | || |||||||| || ||||| Sbjct 1873954 TTGCATACCACCTCTTAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTA 1873895 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| || |||| || | ||||| || |||||||| | | |||||| Sbjct 1873894 GTCCGATAGAGTT--CGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGA 1873837 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGG 44279 |||| || | ||||||||| || ||||| ||| || ||| | || ||||| | Sbjct 1873836 TCTGGTGGAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGT--CAATAGTGTCTG 1873779 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || | || || || || || || | ||||||||||| |||||||| Sbjct 1873778 ATGATTCAACTTCTAATGTGATGGTTTTACCAGTCAARGTCTTCACGAAAATTTGCAT 1873721 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC- 44169 || ||||| || | ||||||| || | || |||||||| || ||||| || | Sbjct 1874175 CCACCTCTAAGACGTAACACCAAATGTAATGTTGATTCCTTTTGAATATTGTAGTCCGAT 1874116 Query 44170 -GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 ||||| || |||| || | ||||| || |||||||| | | |||||||||| | Sbjct 1874115 AGAGTT--CGTCCGTCTTCTAATTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGTG 1874058 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTC 44286 | | ||||||||| || ||||| ||| || ||| | || ||||| | ||||| Sbjct 1874057 GAATACCTTCCTTGTCTTGAATCTTACTCTTGACATTGT--CAATAGTGTCTGATGATTC 1874000 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | || || || || || || | |||||||||||| |||||||| Sbjct 1873999 AACTTCTAATGTGATGGTTTTACCAGTCAAGGTCTTCACGAAAATTTGCAT 1873949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990334189255