Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bacillaris_20[genbank_20GCA_5F002024125.1_202017-03-
09] 111 sequences; 9,274,942 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq28 149 6e-31
seq29 114 1e-20
seq58 100 3e-16
seq47 91.5 2e-13
>seq28
Length=170371
Score = 149 bits (164), Expect = 6e-31
Identities = 374/561 (67%), Gaps = 13/561 (2%)
Strand=Plus/Minus
Query 116657 GCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGG 116716
|| || || || |||||||| ||| ||||| || ||| || |||| | ||||||
Sbjct 14545 GCTGAAGCTTCTTTCTGGACAACCGAAGAGGTTGATCTGGCCCAGGATATTCAGGACTGG 14486
Query 116717 GAGC---GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773
|| | | |||| ||| |||| || | || || | || || || ||||| |||
Sbjct 14485 GAACTTAGGCTGAATGACGACGAACGTTACTTTATTTCACGAGTTCTAGCGTTTTTTGCC 14426
Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833
|| || ||||| || || || ||||| |||| | ||| | || || |
Sbjct 14425 GCTAGTGACGGTATTGTGAATGAGAACTTGGTTTCCAGGTTCAGTACTGACGTTGGTATC 14366
Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893
| ||||| |||||| ||||| || ||||| ||||||||| | ||||| || |||
Sbjct 14365 TCTGAGGCCAAGTGCTTTTACGGATTCCAGATTATGATGGAGAACATTCACTCTGAGATG 14306
Query 116894 TATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTG 116950
|| || || ||||| ||||| | || ||| || ||| ||| ||
Sbjct 14305 TACAGTCTTCTTATTGACACTTACGTCAAGGAAACTAAGGAATCCCAGTTCCTTTT--TG 14248
Query 116951 AACGCCATCGAGACGATGCCGTGCG--TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGA 117008
| ||||| ||||| || ||| ||| | |||||||| ||||||| || |||||||
Sbjct 14247 AT-GCCATTTTCACGATTCC-TGCCATTCAGA-AGAAGGCCAAGTGGGCTCTTCGCTGGA 14191
Query 117009 TCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCG 117068
| | | | || || |||| ||||| || || || ||||| || || ||||| |
Sbjct 14190 TTACTGACGAGGAAGCTAGTTTCGCTGAGCGACTAGTTGCATTCGCAGCTGTTGAGGGTG 14131
Query 117069 TCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCG 117128
| ||||| || || || || || || || |||||||| ||||| ||||| ||||| |
Sbjct 14130 TTTTCTTCTCAGGATCCTTTGCTGCTATTTTCTGGCTCAAAAAACGTGGCCTTATGCCGG 14071
Query 117129 GCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCT 117188
| |||| ||||| |||||| | || || | ||||||||||| ||| ||| || || |
Sbjct 14070 GTTTGACCTTCAGTAACGAGTTGATTTCTCGTGACGAGGGTCTTCATACCGATTTCGCTT 14011
Query 117189 GTTTGCTGTTCAAGCATTTGG 117209
|| | || | || |||||||
Sbjct 14010 GTCTCCTTTACAGCCATTTGG 13990
>seq29
Length=154453
Score = 114 bits (126), Expect = 1e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || ||| | || || || || || || || |||||| |||| || ||| ||
Sbjct 41872 AAAATGCAGATTTTCATCAAGACTCTAACAGGAAAGACTATCACCCTCGAGGTTGAATCC 41813
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | | | ||| |||||| || || || || || || | |||
Sbjct 41812 AATGACACCATTGAGGCCGTAAAGAGCAAAATTAGTGATAAGGAAGGTATTCCTCCTGAC 41753
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
|| ||||| || |||| ||| ||||||||||| || || | ||||||||| ||||||
Sbjct 41752 CAACAACGTCTTATCTTCGCTGGCAAACAGCTTGAAGATGGCCGCACCCTCTCTGACTAC 41693
Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||| ||| |||| || ||
Sbjct 41692 AACATCCAGAAAGAGTCCACTCTTCA 41667
>seq58
Length=350062
Score = 100 bits (110), Expect = 3e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || ||| |||| ||| | ||||| || || || ||| |||| || || |
Sbjct 20756 AAAATGCAGATTTTCATAAAGACGTTGACGGGAAAGACTATTACCCTCGAGGTTGAGTCT 20815
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | | |||| || || |||||| || || || || | |||
Sbjct 20816 AATGACACCATCGAGGCTGTCAAAAGCAAGATCAGCGACAAGGAAGGTATTCCTCCTGAC 20875
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || | |||| ||| || |||||||| || || | |||||||| ||||||
Sbjct 20876 CAGCAGCGTTTGATCTTCGCTGGTAAACAGCTCGAGGATGGCCGCACCCTTTCTGACTAC 20935
Query 40867 AACATCCAGAAGGAGGCCAC 40886
||||||||||||||| ||||
Sbjct 20936 AACATCCAGAAGGAGTCCAC 20955
>seq47
Length=387992
Score = 91.5 bits (100), Expect = 2e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 40782 CGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGA 40841
|||||| || || || || | |||||||| || || |||| ||| ||||| ||||| ||
Sbjct 346329 CGACAAGGAAGGTATTCCTCCTGACCAGCAGCGTCTTATCTTCGCTGGCAAGCAGCTTGA 346270
Query 40842 CGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901
|||| ||||| || ||| || ||||||||||||||| |||| |||||| | || |
Sbjct 346269 GGACGGCCGCACTCTTTCCGAGTATAACATCCAGAAGGAGTCCACTCTGCATTTGGTTCT 346210
Query 40902 GCGCTTGAGGGGCGG 40916
|| ||| | || ||
Sbjct 346209 CCGTTTGCGTGGTGG 346195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218485133360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |