Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bacillaris_20[genbank_20GCA_5F002024125.1_202017-03- 09] 111 sequences; 9,274,942 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq47 125 6e-24 seq29 123 2e-23 seq17 86.0 5e-12 >seq47 Length=387992 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || ||| | || || || ||||| || || |||||||||||||||| Sbjct 346427 GTTAACATGCAGATCTTTATCAAGACCTTGACCGGAAAGACTATCACTCTTGAAGTGGAG 346368 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | |||||| | || | | | || || || |||||||| |||||||| || Sbjct 346367 TCTAATGATACCATCGAAGCTGTGAAGAGCAAGATCAGCGACAAGGAAGGTATTCCTCCT 346308 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || |||||||| || || ||||| ||| | ||||| |||||| | ||||| Sbjct 346307 GACCAGCAGCGTCTTATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACTCTTTCCGAG 346248 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || || ||||| | ||||| ||| | || ||||| || ||| Sbjct 346247 TATAACATCCAGAAGGAGTCCACTCTGCATTTGGTTCTCCGTTTGCGTGGTGGT 346194 >seq29 Length=154453 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| | || ||| |||| || || || |||| || || || ||| || Sbjct 41872 AAAATGCAGATTTTCATCAAGACTCTAACAGGAAAGACTATCACCCTCGAGGTTGAATCC 41813 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || | | || |||||| || ||||| |||||||| || || Sbjct 41812 AATGACACCATTGAGGCCGTAAAGAGCAAAATTAGTGATAAGGAAGGTATTCCTCCTGAC 41753 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||||||||||| || || ||||||||| | || ||| ||||||| |||| || ||| Sbjct 41752 CAACAACGTCTTATCTTCGCTGGCAAACAGCTTGAAGATGGCCGCACCCTCTCTGACTAC 41693 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||| || ||||| ||||| | || || ||| Sbjct 41692 AACATCCAGAAAGAGTCCACTCTTCACTTGGTT 41660 >seq17 Length=239553 Score = 86.0 bits (94), Expect = 5e-12 Identities = 269/414 (65%), Gaps = 11/414 (3%) Strand=Plus/Plus Query 129985 GGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACC 130044 ||||||||||| ||||| |||||| | | |||| ||||| || || || || | | Sbjct 97307 GGACACATCAATGTCCACTCTCCATCAGACTTAACTCTCTTCATGAATAAGTCAGGAATC 97366 Query 130045 CACAGGGCGTACAACAAATCTCGCGCTT----TTCTATCCTCGGCACCCATGTTACGTTT 130100 || || || | |||| ||| || || |||| |||| || | ||||| Sbjct 97367 CAAAGAGCCAAAAACAGATCACGGGCACGGACTTCT-TCCTTACCAGTGTTCTTACGA-- 97423 Query 130101 CAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC 130160 || || | ||| || ||| || | ||||| ||||||| |||||| || | || || Sbjct 97424 -AGATCGATGAAGTCAAAAACATCATCATGCCAGGGTTCAAGATAAATAGCGAAAGCACC 97482 Query 130161 CTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACAT 130217 |||||| || || || ||||| | || | | || ||| |||| || | ||| Sbjct 97483 TGGACGTTTGTTGCCACCCTGATCAACATAACGAGCAGTGTTATTGAAGACACGAAGCAT 97542 Query 130218 TGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAAC 130277 || | ||||||| || ||||| || | | ||| || ||| || || | Sbjct 97543 TGGAAGAATACCGTTGGATGTACCGTTAGTACCGGCGATGTAAGAACCAGTGGCACGGAT 97602 Query 130278 GTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGTAG 130337 || ||||| | ||||| || || || || |||| || || | || ||| ||| Sbjct 97603 ATTGTGAACATTAAGACCAATACCACCAGCAGATTTAGAAATAAGAGCACAAGATTTTAG 97662 Query 130338 CGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGA 130391 || |||||||||||| ||||| ||| ||||| ||| | ||||||||||| Sbjct 97663 GGTATCATAAATGCCATCGATAGAGTCGTCTTTCATGCAAACAAGGAAACACGA 97716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727432186715