Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bacillaris_20[genbank_20GCA_5F002024125.1_202017-03- 09] 111 sequences; 9,274,942 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq29 179 7e-40 seq47 134 3e-26 seq58 127 4e-24 seq22 84.2 4e-11 >seq29 Length=154453 Score = 179 bits (198), Expect = 7e-40 Identities = 181/233 (78%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || ||||| || | |||||||| || ||||||||||| |||||||| || || || Sbjct 41642 TCCGCCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 41701 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | |||||||| | ||| || || ||||| || || | ||||||||| || || Sbjct 41702 GAGGGTGCGGCCATCTTCAAGCTGTTTGCCAGCGAAGATAAGACGTTGTTGGTCAGGAGG 41761 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGC-CTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 ||| |||||||| || ||| ||||| ||| |||||||| |||||||| ||||| | Sbjct 41762 AATACCTTCCTTATCACTAAT-TTTGCTCTTTACGGCCTCAATGGTGTCATTGGATTCAA 41820 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | || | |||||| || ||||| || || ||||||| ||| ||||||||| || Sbjct 41821 CCTCGAGGGTGATAGTCTTTCCTGTTAGAGTCTTGATGAAAATCTGCATTTTG 41873 >seq47 Length=387992 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || |||||||| || ||||||||||| ||||| || || | || || || Sbjct 346213 ACCAAATGCAGAGTGGACTCCTTCTGGATGTTATACTCGGAAAGAGTGCGGCCGTCCTCA 346272 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || ||||| || || | || ||||| || ||||| ||||||||||| Sbjct 346273 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGAGGAATACCTTCCTTGTCGCTG 346332 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||| || || |||||||| || || || ||||| | ||||| || ||| Sbjct 346333 ATCTTGCTCTTCACAGCTTCGATGGTATCATTAGACTCCACTTCAAGAGTGATAGTCTTT 346392 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||||| || |||||||| Sbjct 346393 CCGGTCAAGGTCTTGATAAAGATCTGCAT 346421 >seq58 Length=350062 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| | |||||||| || |||||||| || || || Sbjct 20985 CCACCACGGAGACGAAGCACCAAGTGAATAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 20926 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||| || || ||||| || | | || ||||| || ||| Sbjct 20925 AGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAAGATCAAACGCTGCTGGTCAGGAGGA 20866 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| ||||| ||||| |||||||||||||| || || || Sbjct 20865 ATACCTTCCTTGTCGCTGATCTTGCTTTTGACAGCCTCGATGGTGTCATTAGACTCAACC 20806 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||| || || |||||||| | ||||| | ||| ||||||||| Sbjct 20805 TCGAGGGTAATAGTCTTTCCCGTCAACGTCTTTATGAAAATCTGCATT 20758 >seq22 Length=187262 Score = 84.2 bits (92), Expect = 4e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 224437 GAATTCAGTGCTGTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGA 224496 ||| |||| | ||||| ||| | || ||||| || |||| || | || || Sbjct 23213 GAACTCAGCGGAGTGAGTAATGATAACGACACCACCCTCGAACTTCTTGATAGCACCAGA 23154 Query 224497 AAGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTG 224556 || || || | ||| || |||||||| | || || |||||||| |||| |||| || Sbjct 23153 GAGAGCACCCAACGAATCACGGTCAAGATAATTAGTAGGCTCATCGAGGACAATAAGATG 23094 Query 224557 GGGGCACTGCCACAGGGCTG-CACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGC 224615 ||| | |||||| || | | || | | || ||||| ||||||||||| || || || | Sbjct 23093 GGGTCTCTGCCA-AGTACAGGCAGCCAAGACAAGCTTGACCTTCTGACCACCGGAAAGAC 23035 Query 224616 CGCGGATCCGCGAGTGAGTCGTGAATTCGGGGTCAAGACC 224655 | ||||| || ||||||| || || || |||||||| Sbjct 23034 CACGGATACGAGAGTGAGAAACCAACTCAGGATCAAGACC 22995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621121248920