Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bacillaris_20[genbank_20GCA_5F002024125.1_202017-03- 09] 111 sequences; 9,274,942 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq17 221 1e-52 seq28 183 3e-41 >seq17 Length=239553 Score = 221 bits (244), Expect = 1e-52 Identities = 459/681 (67%), Gaps = 8/681 (1%) Strand=Plus/Plus Query 47886 GATGCTAGATTACATACAGC---TACCTCATTTGGATTAGTATATTGTATTATTTCAGCA 47942 || || |||||||||||||| | ||||| ||| ||| || | | |||||| Sbjct 97022 GAAGCCAGATTACATACAGCAGTTTCCTCA---GGACTAGAGTACTCAACGATTTCACAG 97078 Query 47943 CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA-CATGC 48001 || | |||| || ||||||||||| | ||| | |||||| | |||| | || Sbjct 97079 CACAAATTAGAACTCTTGATAGTACCAAGATTACGCTGATTACTCTTGCGGTTAGCCTGA 97138 Query 48002 GTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA 48061 ||||| |||||||| ||||| | || || || | |||| ||| | || | | ||| Sbjct 97139 -TCCTTATAAAGCATGAAAGGATTACCTGTCTCAGTTTGAGCTTCCAAAATGGCGTACCA 97197 Query 48062 AACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAA 48121 | || ||| || || | | | ||||| | |||| || || || | Sbjct 97198 TAGCTTCTGAGCTTTGATGGTACGACGACCTTTACCCATACGTTCATAACGTGTGTAAAG 97257 Query 48122 CTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAA 48181 || || |||||||| ||||| |||| | | | ||||| ||||| || ||||||||||| Sbjct 97258 CTCTTCGAATTCATCACCATAAACATCAGCAAGACCAGGGCATTCGTTGGGACACATCAA 97317 Query 48182 TGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTAT 48241 || ||| || ||||| || ||||| |||| |||| || || ||||||||||| | Sbjct 97318 TGTCCACTCTCCATCAGACTTAACTCTCTTCATGAATAAGTCAGGAATCCAAAGAGCCAA 97377 Query 48242 AAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTC 48301 ||| | ||| | | | | |||||| || ||| | ||| | ||| || | ||||| Sbjct 97378 AAACAGATCACGGGCACGGACTTCTTCCTTACCAGTGTTCTTACGAAGATCGATGAAGTC 97437 Query 48302 CATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACC 48361 | | |||| ||||||| ||||| | ||| || || | ||||||| ||||| || || Sbjct 97438 AAAAACATCATCATGCCAGGGTTCAAGATAAATAGCGAAAGCACCTGGACGTTTGTTGCC 97497 Query 48362 TCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATT 48421 || ||||| | ||| | ||||| || || | || | | |||||| | |||||| || Sbjct 97498 ACCCTGATCAACATAACGAGCAGTGTTATTGAAGACACGAAGCATTGGAAGAATACCGTT 97557 Query 48422 TGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAAT 48481 ||| |||| || || || | || ||| ||| | || | ||||| || || Sbjct 97558 GGATGTACCGTTAGTACCGGCGATGTAAGAACCAGTGGCACGGATATTGTGAACATTAAG 97617 Query 48482 ACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCC 48541 ||| |||||||| || |||||| || |||||||| ||| |||||||||||||| || Sbjct 97618 ACCAATACCACCAGCAGATTTAGAAATAAGAGCACAAGATTTTAGGGTATCATAAATGCC 97677 Query 48542 TTCTATACTATCATCTATCAT 48562 || ||| || ||| |||| Sbjct 97678 ATCGATAGAGTCGTCTTTCAT 97698 >seq28 Length=170371 Score = 183 bits (202), Expect = 3e-41 Identities = 581/889 (65%), Gaps = 25/889 (3%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | ||| | || || |||||||| || || || | ||||| ||| Sbjct 13719 TTTTGGTAGTCTGAAACACGCTTCTCGAAGAAATTGGTCTTACCAGCCAATGAAATATTC 13778 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATA--tttttttGAATCCTAATTCTAATA 18787 ||||| ||||| || ||||| ||||| || | || || ||| || || ||| | Sbjct 13779 TCCATGAAATCGAAAGGATTGGCGACATTGTACACCTTGTTCTGA--CCCAAAGCTACGA 13836 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 | |||||||| || ||||| | | ||| |||||| | || |||||| || | || Sbjct 13837 GCAGTCTATCAGCCACAAACTCGACATACTGGTTCATTAAGTCGGCATTCATACCGAGTA 13896 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 | ||||| | |||||| | | | || || || |||| ||||| || | | || Sbjct 13897 GACTGACAGGCAAAGCATCTCTGAAGTACTCCTGCTCAATATCGACTGCTTCAGTAAGAA 13956 Query 18908 TAGATACAACTCTATCTTCATTAGGAG--GGTATAGA----AGATGTTTAAACATCAAAC 18961 || | ||||| || || | ||| | | ||| | | | | || Sbjct 13957 TACGT-----TCTATAA-CAAAGGGTGCTGGTCTGTTCTCCAAATGGCTGTAAAGGAGAC 14010 Query 18962 ATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAAC 19021 | || ||||| ||| || |||||||| | | ||||| || ||| || || |||| Sbjct 14011 AAGCGAAATCGGTATGAAGACCCTCGTCACGAGAAATCAACTCGTTACTGAAGGTCAAAC 14070 Query 19022 CAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATA 19081 | ||||| || || | |||||| | |||||| |||| |||||| ||||| || ||||| | Sbjct 14071 CCGGCATAAGGCCACGTTTTTTGAGCCAGAAAATAGCAGCAAAGGATCCTGAGAAGAAAA 14130 Query 19082 TACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAA 19141 ||| || || ||||| || |||||||||| || | ||||||| || | | | || Sbjct 14131 CACCCTCAACAGCTGCGAATGCAACTAGTCGCTCAGCGAAACTAGCTTCCTCGTCAGTAA 14190 Query 19142 TCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAA 19201 |||| || ||||| | |||||||| | | || || || || | || || Sbjct 14191 TCCAGCGAAGAGCCCACTTGGCCTTCTTCTGAATGGCAGGAATCGTGAAAATGGCATCAA 14250 Query 19202 ATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTT 19261 | || || || | || || || || || | || || | | ||||||||| | Sbjct 14251 AAAGGAACTGGGATTCCTTAGTTTCCTTGACGTAAGTGTCAATAAGAAGACTGTACATCT 14310 Query 19262 CTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCT 19321 | || ||||| || || || ||||| ||||||||||| || | || || | || Sbjct 14311 CAGAGTGAATGTTCTCCATCATAATCTGGAATCCGTAAAAGCACTTGGCCTCAGAGATAC 14370 Query 19322 GTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAA 19381 || ||| ||| || || ||||| || ||||| || || || |||||||| |||| Sbjct 14371 CAACGTCAGTACTGAACCTGGAAACCAAGTTCTCATTCACAATACCGTCACTAGCGGCAA 14430 Query 19382 AAAATGCTAATACATGTTTAATAA---AATGTTTTTCATC--TGAGGTTAATGTATTCCA 19436 |||| |||| || || ||||| || ||| || || | || ||| || | ||| Sbjct 14431 AAAACGCTAGAACTCGTGAAATAAAGTAACGTTCGTCGTCATTCAGCCTAA-GT-TCCCA 14488 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 || | |||||| | | | ||| || ||||| |||||| |||||||| || |||| Sbjct 14489 GTCCTGAATATCCTGGGCCAGATCAACCTCTTCGGTTGTCCAGAAAGAAGCTTCAGCTTG 14548 Query 19497 TTTATACATGTTCCATATA-TCACGATATTGTATAGGAAATATAACAAA 19544 ||||| | ||| ||| || || || | |||||||| | |||||| Sbjct 14549 CTTATAAGCCTGCCAGATACTCTCG-TACTCGATAGGAAAGAGAACAAA 14596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108020074040