Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bacillaris_20[genbank_20GCA_5F002024125.1_202017-03- 09] 111 sequences; 9,274,942 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 255 4e-62 seq58 114 1e-19 seq31 107 1e-17 seq27 98.7 7e-15 seq18 98.7 7e-15 >seq1 Length=825974 Score = 255 bits (282), Expect = 4e-62 Identities = 947/1461 (65%), Gaps = 26/1461 (2%) Strand=Plus/Minus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 ||||| ||||| || |||| || || || ||||| || || || | || |||||| Sbjct 169641 TTAGTGATAGTGATCTTCTGAGACTTACCAGTAGATTTGTCGGCAGCGGAGACGTTAAGA 169582 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| || ||||| | ||| || || || || || ||||| || | | ||||| Sbjct 169581 ATACCGTTAGCATCGACATCGAAGGTAACCTCGATCTGAGGAGTACCACGGGGGGCAGGG 169522 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | || | || || | || ||||| ||| | || ||| Sbjct 169521 GGGATACCAGAAAGCTCGAACTTACCGAGGATGTTGTTATCACGAGTAAGAGGACGCTCA 169462 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||||| | ||||| || ||| || || || | | ||| | || | ||| Sbjct 169461 CCCTCGAAGACCTGGATCAAGACACCAGGCTGGTTGTCAGCAGCAGTAGAGAAGA-TCTC 169403 Query 281621 -GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 || || || ||||| || ||||||| |||| ||||| | |||||||| Sbjct 169402 AGACTTCTTGGTGGGAATAGTGCTGTTTCTGGGGATAAGCTTGGTGAACTGGCCACCAGC 169343 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 281739 || || | ||| | ||| | ||||| |||||| | || | | | ||| || || Sbjct 169342 GGTCTCAATACCCAAAGACAAAGGAGCGACATCGAGAAGCAACAAGTCCTGA-GTCTTGG 169284 Query 281740 ATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 281798 | || | | |||| ||| ||||| || || | ||| ||||| || ||||| || |||| Sbjct 169283 AAGAGGTGTCACCAGTAAGGATAGCAGCCTGGACAGCGGCACCGTAAGCAACGGCCTCAT 169224 Query 281799 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTA 281858 |||| || | || || | | |||||| ||| || | |||| || | ||| | Sbjct 169223 CAGGGTTGATAGAACGGTTCAACTCCTTACCAGAGAAGAAGTCAGAAACGAGCT-TCTGA 169165 Query 281859 -CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 281917 |||| || ||||||| || || ||||| | ||||| || | || | || || Sbjct 169164 ACCTTGGGGATACGAGTAGAACCACCAACAAGGACAATCTCGTTAACATCAGACTTGGAG 169105 Query 281918 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAA 281977 | || | |||| ||||| || ||||| || | | || | || | || Sbjct 169104 ACCTTAGCATCCTTCAAAACCTTCTCAACAGGGGCCATGGTAGAACGGAAGAGATCCTGG 169045 Query 281978 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAA 282036 || || || ||||| || | ||| | || | || || ||||| || ||| | | Sbjct 169044 CAGAGCTCCTCGAAACGGGCACGAGTGATAGA-AGTGTAGAAGTCAATACCCTCGTAAAG 168986 Query 282037 AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 282096 ||| |||| ||||| | || ||||| |||||||| || ||||| |||||||| || || Sbjct 168985 AGAGTCAATCTCAATAGGGGTCTGAGTAGAAGAAGAGAGGGCACGCTTAGCACGCTCGCA 168926 Query 282097 TGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATATTTT 282154 || || || || | || | || |||| || | | | || | || || ||| Sbjct 168925 AGCGGTTCTAAGACGACGAAGAGCAC--GCTGGTTACCAGTGATGTCCTTCTTGTACTTT 168868 Query 282155 CTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAAT 282214 |||||||| || | | | | | || || || ||||| ||||| ||||| ||||| Sbjct 168867 CTCTTGAACTCCTGAGCGAAGTGGTTAACGAGGCGGTTATCGAAATCCTCACCACCCAAG 168808 Query 282215 TTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTA 282274 | ||||| || | || || | || | ||| | || || |||| |||||||| Sbjct 168807 TGAGTATCACCAGCAGTGGCCTTGACCTCGAAGATACCGTCATCAATGCTCAAAAGAGAG 168748 Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG--T 282332 ||||| ||| |||||||||| ||| || ||||| || || | || || | | Sbjct 168747 ACATCGAAGGTACCACCACCCAAATCGAAGATAAGAACGTTG--TGCTCACCCTGGCCCT 168690 Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 | || |||||||| || |||| |||||||| || || ||||| ||||| | | ||||| Sbjct 168689 TCTTGTCAAGACCGTAGGCAATGGCAGCAGCGGTAGGCTCATTGATAATACGAAGAACAT 168630 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 ||||||||||||| | || ||||| || || || || | || || ||||| || || | Sbjct 168629 TAAGACCAGCAATAGTACCGGCATCCTTGGTAGCCTGACGCTGGGAGTCGTTGAAGTAAG 168570 Query 282453 CAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA---ATATAAGCGCT-TGCTGTT 282508 |||| |||||||||||||| ||| | | | || ||| | | ||| || || || Sbjct 168569 CAGGGACAGTAATAACGGC--CTGAT-CAACCTTACCACCGAGGT-AGCCCTCAGCAGTC 168514 Query 282509 TGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCA 282568 | ||||| || | | || ||| || || || | || |||| | ||||| ||| Sbjct 168513 TCCTTCATCTTGGTGAGAACCATGGAAGAGATCTCCTCAGGAGTGAAAGTCTTGGTCTCA 168454 Query 282569 TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAA 282628 | ||| || |||| || ||||| | | |||||| || || || || Sbjct 168453 CCCTTGTATTCAACCTCAATGACGGGCTTATTGCTCTTGTCAATAACCTTGAAAGGGAAA 168394 Query 282629 TATTTCATATCTGATTGAACACTTTGG-TCATTAAAATCTCTACCAATTAATCGTTTTGC 282687 | || ||||| | | | || || |||| | | | ||||| | || || || Sbjct 168393 TGCTTAATATC-GTTCTGAGTCTCAGGATCATCCATCTTACGGCCAATAAGACGCTTGGC 168335 Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747 ||| || | ||||| | || || | ||||| |||| ||||| ||||| ||||| || Sbjct 168334 ATCGAAGACGGTATTAGAAGGGTTCATGGCAGCCTGATTCTTGGCGGCATCACCAATAAG 168275 Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807 | | || || || || || | ||| | || ||||| || || ||||| ||||| || || Sbjct 168274 ACGCTCAGTGTCAGTGAAGGCAACGAACGAAGGAGTAGTACGGTTACCCTGATCGTTGGC 168215 Query 282808 AATAATTTCAACTTTACCATT 282828 ||||||||||||| | |||| Sbjct 168214 AATAATTTCAACTCTGTCATT 168194 >seq58 Length=350062 Score = 114 bits (126), Expect = 1e-19 Identities = 156/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGA--TTAACTGCAGCTTGATAT 282727 |||||| | || || ||||||||| ||||| || | ||| ||||| |||| Sbjct 55391 ACCAATGATACGCTTGATATCAAAAATGGTATT--TTCAACGTTAGAGGCAGCCTGATTC 55448 Query 282728 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 282787 || || ||||| |||| || | |||| || | || | ||| || || ||||| | Sbjct 55449 TTAGCAGCATCACCAACCAAACGTTCGCCATCCTTGAAAGCAACGTAAGAAGGAGTGATA 55508 Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 282847 || ||||| ||||| || |||| |||||||||| | |||| ||| |||||||||||| Sbjct 55509 CGGTTACCCTGATCGTTGGCAAGAATTTCAACTCTGCCATGCTGCATAACACCTACACAA 55568 Query 282848 CTAAAAGTTGTTCCTAAATCAATACCAATAGCAATT 282883 | ||||| |||||||||||||||||| ||||| Sbjct 55569 GAGTATGTTGTACCTAAATCAATACCAATAACAATT 55604 >seq31 Length=139062 Score = 107 bits (118), Expect = 1e-17 Identities = 111/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 432282 TTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCT 432341 |||| ||||||||||||||| | | |||||||||||||| ||||||||| || | | Sbjct 118819 TTGAAGGGTAAAGAAGGTCGTTTGCGTGGAAATTTGATGGGCAAGCGTGTCAATTTCAGT 118760 Query 432342 GCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTC 432401 || ||||||||||| || ||| |||||| ||| |||| || | ||||||||||| | Sbjct 118759 GCTCGTACAGTTATCACCGGTGACCCTAATCTTGATCTCGATCAGGTTGGTGTTCC-CAA 118701 Query 432402 AT-TATTGCGAAAAATCTTACTT 432423 || ||||||| | |||| ||| Sbjct 118700 ATCTATTGCGCGTACTCTTTCTT 118678 >seq27 Length=172996 Score = 98.7 bits (108), Expect = 7e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||||||| || || ||||||||||| || || || |||| || ||||||||| || Sbjct 105547 TTCTCAAGACCGTAAGCCAAAGCAGCAGCGGTGGGCTCGTTAACAACTCTCAAAACGTTC 105488 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | ||| |||| || ||||| || || ||||| | || ||||| || || || || Sbjct 105487 AAACCGACAATCTGGCCAGCATCCTTGGTTGCTTGACGCTGAGAATCATTGAAGTAAGCG 105428 Query 282455 GGAACAGTAATAACGGCAT 282473 || ||||||| |||||||| Sbjct 105427 GGGACAGTAACAACGGCAT 105409 >seq18 Length=219984 Score = 98.7 bits (108), Expect = 7e-15 Identities = 192/283 (68%), Gaps = 3/283 (1%) Strand=Plus/Minus Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 |||| ||||| | ||| ||||| | |||| || | ||||| | || | ||| | | Sbjct 11386 TATCGAAATCCTGACCACCCAAGTGGGTATCACCAGCAGTAGCCTTAACATTGAAGACAC 11327 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 || | | | ||| | |||| ||||| || |||||||||| ||| ||||| || | Sbjct 11326 CACCCTGGATAGAGAGCAGAGAGACATCGAAAGTACCACCACCCAAATCGAAAATGAGAA 11267 Query 282312 CATTCATTTCTTTGTCTTGGTTTTTATCA---AGACCATACGCAAAAGCAGCAGCAGTTG 282368 | | | | || | ||| || | || ||||| || |||| ||||||||| || | Sbjct 11266 CGTGCTTCTCCTCGTCAGTCTTACCAGCACCGAGACCGTAAGCAATAGCAGCAGCGGTAG 11207 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | || || || || | | ||| ||||||||||| || || ||||| ||||| || | Sbjct 11206 GCTCGTTGATGATACGAAGAACGTTAAGACCAGCGATGGAACCAGCATCCTTAGTAGCCT 11147 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 | | || || ||||| || || ||||| ||||| || || || Sbjct 11146 GACGCTGGGAGTCGTTGAAGTAGGCAGGGACAGTGATGACAGC 11104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740624950369086